Table 3.
Prokaryotic genera significantly enriched in the rhizosphere of lettuce grown in long‐term organic fertilized soils of both LTEs as compared with mineral fertilized soils according to Likelihood ratio test under negative binomial distribution and generalized linear models.
| DOK | HUB | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Domain | Phylum | Class | Order | Family | Genus | CONMIN | BIODYN2 | p value | HU‐Min | HU‐Org | p Value |
| Archaea | Thaumarchaeota | SIGW621 | Uncultured bacterium | Unclassified | Unclassified | 0.01 ± 0.01 | 0.32 ± 0.15 ↑ | *** | 0 ± 0 | 0.01 ± 0.01 ↑ | * |
| Bacteria | Actinobacteria | Acidimicrobiia | Acidimicrobiales | Uncultured | Uncultured Acidimicrobidae bacterium | 0.01 ± 0.01 | 0.05 ± 0.02 ↑ | * | 0 ± 0 | 0.02 ± 0.01 ↑ | ** |
| Bacteria | Actinobacteria | Actinobacteria | Streptosporangiales | Streptosporangiaceae | Thermopolyspora | 0 ± 0 | 0.03 ± 0.01 ↑ | ** | 0 ± 0 | 0.01 ± 0.01 ↑ | ** |
| Bacteria | Bacteroidetes | Cytophagia | Cytophagales | Cytophagaceae | Ohtaekwangia | 0.02 ± 0.03 | 0.63 ± 0.37 ↑ | *** | 0 ± 0 | 0.02 ± 0.02 ↑ | ** |
| Bacteria | Bacteroidetes | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | 0.05 ± 0.02 | 1.36 ± 1.36 ↑ | *** | 0.49 ± 0.77 | 2.53 ± 2.06 ↑ | * |
| Bacteria | Firmicutes | Bacilli | Bacillales | Thermoactinomycetaceae | Thermoflavimicrobium | 0 ± 0 | 0.31 ± 0.16 ↑ | *** | 0.02 ± 0.01 | 0.05 ± 0.02 ↑ | * |
| Bacteria | Firmicutes | Bacilli | Bacillales | Paenibacillaceae | Thermobacillus | 0 ± 0 | 0.07 ± 0.01 ↑ | *** | 0.01 ± 0.01 | 0.1 ± 0.04 ↑ | *** |
| Bacteria | Firmicutes | Bacilli | Bacillales | Thermoactinomycetaceae | Planifilum | 0 ± 0 | 0.05 ± 0.02 ↑ | *** | 0.01 ± 0.01 | 0.04 ± 0.03 ↑ | * |
| Bacteria | Firmicutes | Bacilli | Bacillales | Family XII | Incertae Sedis | 0 ± 0 | 0.02 ± 0 ↑ | ** | 0 ± 0 | 0.01 ± 0.01 ↑ | ** |
| Bacteria | Firmicutes | Bacilli | Bacillales | Bacillaceae | Ureibacillus | 0.01 ± 0.01 | 0.04 ± 0.05 ↑ | * | 0 ± 0.01 | 0.11 ± 0.06 ↑ | *** |
| Bacteria | Firmicutes | Erysipelotrichia | Erysipelotrichales | Erysipelotrichaceae | Asteroleplasma | 0.03 ± 0.03 | 0.15 ± 0.07 ↑ | * | 0 ± 0 | 0.04 ± 0.04 ↑ | *** |
| Bacteria | Proteobacteria | Deltaproteobacteria | Bdellovibrionales | Bdellovibrionaceae | Bdellovibrio | 0.02 ± 0.02 | 0.18 ± 0.11 ↑ | ** | 0.18 ± 0.09 | 0.42 ± 0.23 ↑ | * |
| Bacteria | Verrucomicrobia | Verrucomicrobiae | Verrucomicrobiales | Verrucomicrobiaceae | Roseimicrobium | 0.01 ± 0.02 | 0.09 ± 0.04 ↑ | ** | 0.01 ± 0.01 | 0.18 ± 0.3 ↑ | *** |
The average relative abundances (n = 4, except CONMIN and BIODYN2: n = 3) are shown along with standard deviation.
*p < 0.05; **p < 0.01; ***p < 0.001.