Figure 3.

Heatmap representing the average Kimura substitution level (CpG adjusted, K2P) of each TE family per sample. Divergence was estimated by mapping 0.5X of unassembled reads of each sample against the Drosophila melanogaster TE library with RepeatMasker. The colour scale, from green to red, is proportional to the K2P distance. Cladograms indicate the level of similarity between populations based on the TE divergence per family [Colour figure can be viewed at http://wileyonlinelibrary.com]