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. Author manuscript; available in PMC: 2020 Aug 6.
Published in final edited form as: Biochemistry. 2019 Jul 26;58(31):3340–3353. doi: 10.1021/acs.biochem.9b00326

Figure 7.

Figure 7.

(a) Modified covalent docking of L-glycero-L-galacto-octuluronate-1-P into YdjI. Shown in blue sticks is the top result from the docking routine. Shown in black dotted lines are predicted interactions between the substrate and YdjI receptor. Shown in green space filling is the predicted active site cavity in which the substrate binds. (b) Two-dimensional illustration of the active site and interactions with docked L-glycero-L-galacto-octuluronate-1-P. Interactions are shown with the dotted lines and measured in angstroms.