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. 2019 Jul 11;100(1):143–157. doi: 10.1111/tpj.14435

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© 2019 The Authors The Plant Journal published by Society for Experimental Biology and John Wiley & Sons Ltd

This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

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Overlap of differentially expressed genes (DEGs) identified in four differential expression analyses including a total of 19 wild and cultivated accessions. O/C: comparison between all oleasters and all cultivated accessions; EO/EC: comparison between eastern oleasters and eastern cultivars; WO/WC: comparison between western oleasters and western cultivars; EO/WO: comparison between eastern oleasters and western oleasters. Numbers in parentheses indicate the total number of DEGs for each of these four analyses. We identified 1136 genes differentially expressed in relation to the domestication process. These were DEGs either when comparing all oleasters and all cultivars or when comparing eastern oleasters and eastern cultivars or both but were removed from this list DEGs related to eastern/western geographic differentiation as identified by the analysis EO/WO and DEGs in relation to the divergence between western oleasters and western cultivars (WO/WC).