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. 2019 Jun 24;286(20):3998–4023. doi: 10.1111/febs.14953

Table 2.

DPAP3, DPAP1 and CatC inhibition constants for the vinyl sulfone library

P2 DPAP3 DPAP1 CatC
k inact ·103 (s−1) K i (nm) k inact/K i·10‐3 (m −1·s−1) k inact ·103 (s−1) K i (nm) k inact/K i·10‐3 (m −1·s−1) k inact ·103 (s−1) K i (nm) k inact/K i·10−3 (m −1·s−1)
Gly 4.2 ± 0.3 3300 ± 750 1.30 ± 0.25 3.0 ± 0.2 3300 ± 750 0.9 ± 0.1 3.0 ± 0.2 70 ± 9 43 ± 4
Ala 2.4 ± 0.1 88 ± 13 27 ± 3 3.03 ± 0.09 90 ± 7 34 ± 2 3.00 ± 0.06 9.7 ± 0.4 310 ± 8
Acpc 3.2 ± 0.1 47 000 ± 3000 0.0677 ± 0.0001 6.2 ± 0.3 49 000 ± 4000 0.127 ± 0.006 1.03 ± 0.06 3200 ± 700 0.33 ± 0.06
hAla 2.2 ± 0.3 13.5 ± 6 166 ± 50 5.2 ± 0.7 19 ± 4 267 ± 26 2.9 ± 0.2 5.9 ± 0.9 500 ± 50
Aib N.S. N.S. 0.0363 ± 0.0006 8.9 ± 0.5 18 000 ± 2000 0.49 ± 0.03 1.20 ± 0.07 2100 ± 300 0.57 ± 0.06
Val 3.2 ± 0.2 5.7 ± 1.1 554 ± 84 3.6 ± 0.2 2.6 ± 0.4 1380 ± 140 2.9 ± 0.1 14 ± 2 200 ± 15
Ile 3.4 ± 0.4 23 ± 9 148 ± 45 3.2 ± 0.1 92 ± 8 34 ± 3 3.7 ± 0.8 1300 ± 400 2.9 ± 0.3
nLeu 3.7 ± 0.2 31 ± 3 120 ± 7.5 4.4 ± 0.3 14 ± 2 305 ± 24 2.40 ± 0.05 7.0 ± 0.5 340 ± 20
Cba 2.5 ± 0.1 140 ± 25 17 ± 2.5 5.4 ± 0.4 13 000 ± 2000 0.41 ± 0.03 1.29 ± 0.03 2400 ± 140 0.53 ± 0.02
Thr 2.0 ± 0.1 36 ± 8 55 ± 10 4.4 ± 0.2 112 ± 10 39 ± 2 2.38 ± 0.03 65 ± 3 36 ± 1
Asn 7.4 ± 0.8 2100 ± 1000 3.5 ± 1.4 9.9 ± 0.5 10 500 ± 750 0.95 ± 0.02 2.40 ± 0.07 260 ± 30 9.2 ± 0.7
Gln 2.9 ± 0.2 80 ± 20 35 ± 8 4.7 ± 0.2 50 ± 3 93 ± 3 2.3 ± 0.1 15 ± 3 160 ± 25
Asp 2.9 ± 0.2 1900 ± 400 1.5 ± 0.2 5.4 ± 0.2 2100 ± 200 2.6 ± 0.10 3.0 ± 0.1 2200 ± 200 1.4 ± 0.2
Glu 2.7 ± 0.1 51 ± 8 53 ± 6 5.0 ± 0.4 650 ± 100 7.6 ± 0.75 2.6 ± 0.1 140 ± 20 18 ± 2
His 3.7 ± 0.3 100 ± 25 35.5 ± 7.5 4.3 ± 0.3 150 ± 20 29 ± 3 2.1 ± 0.1 0.6 ± 0.1 3350 ± 500
Lys N.S. N.S. 0.020 ± 0.001 N.S. N.S. 0.081 ± 0.004 1.49 ± 0.05 3600 ± 200 0.42 ± 0.02
Arg N.S. N.S. 0.065 ± 0.006 N.S. N.S. 0.084 ± 0.002 4.0 ± 0.5 11 000 ± 2000 0.38 ± 0.02
Phg N.S. N.S. 0.0357 ± 0.0007 8.3 ± 0.5 7000 ± 650 1.19 ± 0.05 2.5 ± 0.2 86 ± 20 29 ± 5
2fa 3.8 ± 0.3 39 ± 10 97 ± 18 5.2 ± 0.4 11 ± 3 470 ± 90 3.7 ± 0.2 2.1 ± 0.2 1720 ± 90
2ta 3.4 ± 0.3 29 ± 7 118 ± 23 3.8 ± 0.3 82 ± 20 47 ± 7 3.3 ± 0.3 6.5 ± 1 510 ± 55
Cha 2.7 ± 0.1 90 ± 20 31.6 ± 5.5 N.S. N.S. 0.020 ± 0.001 2.3 ± 0.1 300 ± 40 7.7 ± 0.8
Phe 2.6 ± 0.2 45 ± 13 60 ± 15 N.S. N.S. 0.40 ± 0.01 2.18 ± 0.08 1.4 ± 0.2 1600 ± 200
Phe(Me) 5.4 ± 0.4 9200 ± 300 0.580 ± 0.025 N.S. N.S. 0.314 ± 0.005 2.8 ± 0.2 1300 ± 200 2.2 ± 0.3
Phe(I) 3.8 ± 0.3 110 ± 30 36 ± 10 7.0 ± 0.3 47 000 ± 3500 0.151 ± 0.006 1.02 ± 0.06 185 ± 40 5.5 ± 0.9
Phe(NH2) 3.1 ± 0.2 39 ± 7 80 ± 12 5.0 ± 0.4 22 000 ± 2500 0.23 ± 0.01 1.01 ± 0.02 5.3 ± 0.3 191 ± 9
Tyr 2.18 ± 0.07 12.7 ± 1.5 172 ± 16 N.S. N.S. 0.310 ± 0.005 2.10 ± 0.06 11.5 ± 0.9 182 ± 10
Tyr(NO2) 7.2 ± 0.9 250 ± 40 28.8 ± 0.8 N.S. N.S. 0.023 ± 0.002 N.S. N.S. 0.147 ± 0.008
hPhe 2.36 ± 0.08 310 ± 30 7.6 ± 0.7 N.S. N.S. 0.029 ± 0.002 N.S. N.S. 0.103 ± 0.005
Trp 2.5 ± 0.1 30 ± 6 84 ± 14 N.S. N.S. 0.074 ± 0.002 1.98 ± 0.03 61 ± 4 32 ± 2
Igl 2.2 ± 0.1 29 ± 5 78 ± 12 N.S. N.S. 0.313 ± 0.007 2.3 ± 0.1 240 ± 40 10 ± 1
2Nal 3.7 ± 0.3 7100 ± 1000 0.510 ± 0.04 5.3 ± 1.3 15 200 ± 6500 0.35 ± 0.07 2.6 ± 0.2 1800 ± 400 1.5 ± 0.2
Bip N.S. N.S. 0.0314 ± 0.0004 N.S. N.S. 0.0178 ± 0.0004 2.53 ± 0.09 6200 ± 800 0.41 ± 0.04
Inp 5.2 ± 0.4 65 000 ± 800 0.079 ± 0.004 N.S. N.S. 0.03 ± 0.001 1.05 ± 0.06 5600 ± 900 0.19 ± 0.02
Amc 5.7 ± 0.3 75 000 ± 7000 0.076 ± 0.003 5.8 ± 0.3 27 000 ± 2500 0.213 ± 0.009 0.97 ± 0.04 1000 ± 200 0.94 ± 0.17
3Abz 3.4 ± 0.4 3100 ± 600 1.1 ± 0.1 4.8 ± 0.3 3000 ± 500 1.6 ± 0.2 1.08 ± 0.07 55 ± 12 20 ± 4
Amb N/A 3200 ± 1000 N/A N.S. N.S. 0.140 ± 0.007 1.6 ± 0.1 2100 ± 300 0.74 ± 0.06

N.S. No saturation, only k inact/ K i could be obtained. N/A, no time‐dependent inactivation was observed, data consistent with reversible inhibition. Standard error of the global fit for each parameter and inhibitor obtained by fitting k obs values (1 or 2 technical replicates for DPAP3, single replicates for DPAP1 and CatC) to Eqs. 6 or 7 are shown.