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. 2019 Jun 17;87(11):943–951. doi: 10.1002/prot.25756

Table 5.

Homology models chosen as starting structures for MD simulations

Homology model A‐loop class P‐loop class αC‐helix class Mean RMSD
ABL1—HM 8 Open DFG‐out Collapsed αC‐out 2.64 ± 0.55
ABL1—HM 12 Closed A‐under‐P Stretched αC‐in 2.26 ± 0.25
ABL1—HM 16 Closed type 2 Stretched αC‐out 3.19 ± 0.34

The structural classifications refer to the chimeric template that was used to build the respective homology model. Mean backbone RMSD values were calculated over MD trajectories of 200 ns length with respect to their energy‐minimized starting structure.