Table 2.

Statistics of the libraries depuration against sequences of chloroplast, mitochondria and RFam

Processed sequence tags	Library
	O2P1	O2P2	T3P1	T3P2
	1,302,375	913,356	1,386,428	1,658,983
Mitochondria
Aligned reads	2374 (0.18%)	1730 (0.19%)	4953 (0.36%)	2906 (0.18%)
Non-aligned reads	1,300,001 (99.82%)	911,626 (99.81%)	1,381,475 (99.64%)	1,656,077 (99.82%)
Chloroplast
Aligned reads	3295 (0.25%)	2528 (0.28%)	9179 (0.66%)	3776 (0.23%)
Non-aligned reads	1,299,080 (99.75%)	910,828 (99.72%)	1,377,249 (99.34%)	1,655,207 (99.77%)
RFam
Aligned reads	64,800 (4.98%)	48,496 (5.31%)	73,236 (5.28%)	63,895 (3.85%)
Non-aligned reads	1,237,575 (95.02%)	864,860 (94.69%)	1,313,192 (94.72%)	1,595,088 (96.15%)
Depured sequence tags	1,236,287 (94.9%)	863,918 (94.6%)	1,311,009 (94.6%)	1,593,460 (96.1%)