Table 5.

Eleven SNP markers with significant effects on albumen quality by multivariate analysis.

GGA	SNP	Position	$P$ value	Traits	MAF	EA/AA	Location	Candidate gene
4	rs14491074	76 631 420	$\mathrm{3.21}\times {\mathrm{10}}^{-\mathrm{8}}$	AH32, AH52, AH60	0.054	C/T	intergenic	LDB2
4	rs315201454	76 457 427	$\mathrm{4.38}\times {\mathrm{10}}^{-\mathrm{8}}$	AH32, AH52, AH60	0.057	G/A	intron	NCAPG
4	rs316243629	76 467 271	$\mathrm{4.38}\times {\mathrm{10}}^{-\mathrm{8}}$	AH32, AH52, AH60	0.057	A/G	intron	NCAPG
4	rs14491030	76 458 342	$\mathrm{5.63}\times {\mathrm{10}}^{-\mathrm{8}}$	AH32, AH52, AH60	0.058	G/A	missense	NCAPG
4	rs314745738	76 406 489	$\mathrm{2.19}\times {\mathrm{10}}^{-\mathrm{7}}$	AH32, AH52, AH60	0.227	G/A	intron	LCORL
4	rs16437368	77 205 038	$\mathrm{2.86}\times {\mathrm{10}}^{-\mathrm{7}}$	AH32, AH52, AH60	0.051	C/T	intron	BST1
4	rs313185009	77 654 701	$\mathrm{4.71}\times {\mathrm{10}}^{-\mathrm{7}}$	AH32, AH52, AH60	0.059	G/A	intergenic	FGFBP1
4	rs314487178	76 400 165	$\mathrm{6.44}\times {\mathrm{10}}^{-\mathrm{7}}$	AH32, AH52, AH60	0.227	T/C	intron	LCORL
4	rs15619270	76 450 114	$\mathrm{8.18}\times {\mathrm{10}}^{-\mathrm{7}}$	AH32, AH52, AH60	0.056	C/G	intergenic	NCAPG
5	rs314039089	28 424 606	$\mathrm{6.06}\times {\mathrm{10}}^{-\mathrm{7}}$	AH32, AH44, AH48	0.280	T/C	intergenic	RAD51B
3	rs314618917	104 795 435	$\mathrm{3.87}\times {\mathrm{10}}^{-\mathrm{7}}$	HU32, HU44, HU48	0.083	A/G	intron	ZNF512

Abbreviations: SNP, single nucleotide polymorphism; GGA, Gallus gallus chromosome; EA, effect allele (minor allele); AA, alternative allele (major allele); MAF, minor allele frequency.