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. 2019 May 27;35(22):4757–4759. doi: 10.1093/bioinformatics/btz436

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© The Author(s) 2019. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 1. — Setup, execution and results from snakePipes. (a) All configurable parameters for snakepipes are defined as YAML files during setup. However, most parameters can be overwritten during execution by providing another YAML file, adding flexibility to the analysis. (b) Output of HiC (track 1), WGBS (track 2), ATAC-seq (track 3), allele-specific ChIP-seq (tracks 3–7) and RNA-seq (tracks 8–9) workflows, plotted using pyGenomeTracks (Ramírez et al., 2018)