Table 5.
Gene sets enriched in phenotype high.
| MSigDB collection | Gene set name | NES | NOM p val | FDR q val |
|---|---|---|---|---|
| h.all.v6.2.symbols.gmt | HALLMARK_MITOTIC_SPINDLE | -1.846927 | 0.005917 | 0.205141 |
| h.all.v6.2.symbols.gmt | HALLMARK_G2M_CHECKPOINT | -1.710802 | 0.016293 | 0.255083 |
| h.all.v6.2.symbols.gmt | HALLMARK_E2F_TARGETS | -1.583288 | 0.045643 | 0.40425 |
Notes: gene sets with NOM P value < 0.05 and FDR q value < 0.25 are considered as significant. Abbreviations: FDR: false discovery rate; NES: normalized enrichment score; NOM: nominal.