REAGENT or RESOURCE | Source | Identifier |
---|---|---|
Antibodies | ||
PE-Cy7 Mouse Anti-Human CD19 | BD Biosciences | Cat#341113_clone SJ25-C1 |
Alexa Fluor 488 goat anti-Human IgM | Invitrogen | Cat#A21215; RRID:AB_2535800 |
Goat anti-Human IgA FITC | Invitrogen | Cat#A18788; RRID:AB_2535565 |
Anti-Human CD3 PC5 | Beckman Coulter | Cat#A07749 |
Anti-Human CD38 APC | BD Pharmingen | Cat#555462_clone HIT2 (RUO); RRID:AB_398599 |
Anti-Human CD14 PC5 | Beckman Coulter | Cat#A07765 |
Anti Human CD27 BV650 | BioLegend | Cat#302827_clone O323; RRID:AB_11124941 |
AffiniPure F(ab’)2 Fragment Goat Anti-Human IgA+IgG+IgM (H+L) | Jackson Immunoresearch | Cat#109-006-064; RRID:AB_2337548 |
AP-conjugated anti-human IgG secondary antibody | Southern Biotech | Cat#2040-04; RRID: AB_2795643 |
10E8 recombinant mAb | IRB and Pasteur; Huang et al., 2012 | PMID:23151583; RRID:AB_2491067 |
HK20 recombinant mAb | IRB; Sabin et al., 2010 |
PMID:21124990; RRID:AB_2491018 |
4E10 recombinant mAb | IRB and Pasteur; Stiegler et al., 2001 | PMID:11788027; RRID:AB_2491029 |
LN01 Recombinant mAb and All Variants | this paper | N/A |
Mouse Anti-HIV-1 Gag FITC (Clone KC57) | Beckman Coulter | Cat#6604665 |
mGO53 | Dr. Hugo Mouquet, Institut Pasteur, Paris; Wardemann et al., 2003 | PMID:12920303 |
3BNC117 | Produced by Dr. Hugo Mouquet; Scheid et al., 2011 | PMID: 21764753; RRID:AB_2491033 |
10–1074 | Produced by Dr. Hugo Mouquet; Mouquet et al., 2012 | PMID: 23115339; RRID:AB_2491062 |
PGT128 | Produced by Dr. Hugo Mouquet; Walker et al., 2011 | PMID:21849977; RRID:AB_2491047 |
PGT151 | Produced by Dr. Hugo Mouquet; Falkowska et al., 2014 | PMID: 24768347 |
Bacterial and Virus Strains | ||
HIV-1 PV strain CE1176 | Fraunhofer Institute for Biomedical Engineering IBMT | N/A |
HIV-1 PV strain BJOX2000 | Fraunhofer Institute for Biomedical Engineering IBMT | N/A |
HIV-1 PV strain X1632 | Fraunhofer Institute for Biomedical Engineering IBMT | N/A |
HIV-1 PV strain 25710 | Fraunhofer Institute for Biomedical Engineering IBMT | N/A |
HIV-1 PV strain TRO.11 | Fraunhofer Institute for Biomedical Engineering IBMT | N/A |
HIV-1 PV strain CH119 | Fraunhofer Institute for Biomedical Engineering IBMT | N/A |
HIV-1 PV strain 246F3 | Fraunhofer Institute for Biomedical Engineering IBMT | N/A |
HIV-1 PV strain CE0217 | Fraunhofer Institute for Biomedical Engineering IBMT | N/A |
HIV-1 PV strain CNE55 | Fraunhofer Institute for Biomedical Engineering IBMT | N/A |
SVA-MLV_control PV | Fraunhofer Institute for Biomedical Engineering IBMT | N/A |
Epstein Barr Virus | IRB | N/A |
pCH058.c/2960 | NIH AIDS Reagent Program | Cat#11856 |
pCH077.t/2627 | NIH AIDS Reagent Program | Cat#11742 |
pNL(AD8) | NIH AIDS Reagent Program | Cat#11346 |
pYU2 | NIH AIDS Reagent Program | Cat#1350 |
Standard panel of reference Env pseudoviruses | Huang et al., 2016 | Multiclade Reference Panel PMID:27315479 |
OverExpress C41(DE3) chemically competent E. coli cells | Sigma-Aldrich | Cat#CMC0017 |
Ni-NTA Agarose | Qiagen | Cat#30210 |
Biological Samples | ||
HIV-1 Infected ART Naïve Patient LNMCs | Hospital “Sacco” in Milan, Italy | N/A |
Human serum | Etablissement Français du Sang | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
28amino acids long peptide gp41 MPER | Pepscan | N/A |
Human recombinant IL-6 | BD Pharmingen | Cat#550071 |
Human recombinant IL-21 | ImmunoTools | Cat#11340215 |
Human recombinant IL-2 | IRB | N/A |
MPER-TM1 Peptide | Smart Bioscience | www.smart-bioscience.com |
Fos-Choline-12 | anatrace | Cat#F308 |
n-Octyl-β-D-glucosid n-Octyl-β-D-Glucopyranoside | anatrace | Cat#O311 |
PEG3350 | Sigma-Aldrich | Cat#88276 |
PEG8000 | Sigma-Aldrich | Cat#89510 |
HEPES | Sigma-Aldrich | Cat#H4034 |
Ethylene glycol | Carl Roth | Cat#6881.1 |
06:0 PS | Avanti Polar Lipids | Cat#840030 |
Critical Commercial Assays | ||
ImmunoWELL cardiolipin (IgG) test | GenBio | Cat#3090 |
Pierce Rapid Gold BCA Protein Assay kit | Thermo Fisher Scientific | Cat#A53225PR |
NK cell isolation kit | Miltenyi Biotec | Cat#130-092-657 |
LIVE/DEAD Fixable Aqua Dead Cell Stain Kit | Invitrogen | Cat#L34965 |
ANA HEp-2 Test System | Zeus Scientific | Cat# FA2400 |
EZ-LinkNHS-PEG4-Biotinylation Kit | Thermo Scientific | Cat#21455 |
Deposited Data | ||
MPER-TM1-LN01 complex | this paper | 6SNC |
MPER-TM1-LN01-PS complex | this paper | 6SND |
MPER-TM2-LN01 complex | this paper | 6SNE |
Experimental Models: Cell Lines | ||
TZM-bl cell line | NIH AIDS Reagent Program | Cat#8129 |
TZM-bl FcγRI cell line | NIH AIDS Reagent Program | Cat#11798 |
Expi293F cells | Thermo Fisher Scientific | Cat#A14527 |
Mesenchimal stromal cells (MSC) | IRB | N/A |
CEM-NKR-CCR5 | NIH AIDS Reagent Program | Cat# 4376 |
Raji | ATCC | CCL-86 |
293T/17 | ATCC | Cat# CRL-11268 |
Experimental Models: Organisms/Strains | ||
Mouse: homozygous human FcRn (huFcRn) transgenic mice_Tg276 strain | Jackson Laboratory | JAX: 004919 |
Oligonucleotides | ||
CpG 2006 | Microsynth | N/A |
Recombinant DNA | ||
Plasmid: IgG1 expression vector | Tiller et al., 2008 | PMID:17996249 |
Plasmid: Igk expression vector | Tiller et al., 2008 | PMID:17996249 |
pMX-YU2-ENVΔCT- IRES-GFP | Provided by Dr. Hugo Mouquet, Pasteur | N/A |
Plasmid: MPER-TM2 expression vector | This study | N/A |
Software and Algorithms | ||
Prism 8 | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
CLC Main Workbench 8 | QIAGEN | https://www.qiagenbioinformatics.com/products/clc-main-workbench/ |
IMGT-the International Immunogenetics Information System | Lefranc et al., 1999 | http://www.imgt.org |
XDS | Kabsch, 2010 | PMID:20124693 |
Phaser | McCoy et al., 2007 | PMID:19461840 |
COOT | Emsley et al., 2010 | PMID:20383002 |
REFMAC | Murshudov et al., 1997 | PMID:15299926 |
Phenix | Adams et al., 2010 | PMID:20124702 |
SBGrid | Morin et al., 2013 | N/A |
Pymol | Warren DeLano | www.pymol.org |
VMD (Version 1.9.4) | Humphrey et al., 1996 | https://www.ks.uiuc.edu/Research/vmd/ |
NAMD (Version 2.13) | Phillips et al., 2005 | https://www.ks.uiuc.edu/Research/namd/ |
CHARMM-GUI | Jo et al., 2008 | http://www.charmm-gui.org |
WebLogo | Schneider and Stephens, 1990 | https://weblogo.berkeley.edu/logo.cgi |
wwPDB OneDep System | https://deposit-pdbe.wwpdb.org | |
wwPDB Validation Service | https://validate.wwpdb.org/ | |
BLI Data Analysis software (v11.1.0.25) | Pall FortéBio | https://www.moleculardevices.com |
SBGrid Consortium | (Morin et al., 2013) | https://sbgrid.org/ |
Python 3.7 | https://python.org | |
Biacore T200 Control Software | https://www.gelifesciences.com/biacore |