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. 2019 Oct 16;20(20):5122. doi: 10.3390/ijms20205122

Table 4.

Expressed miRNAs identified in comparisons of flower development stages between lower and upper parts of the raceme with padj < 0.05.

Flower Development
ID miRNA Sequence miRBase Annotation log2FC p-value padj Target Description (psRNAtarget/degradome)
Lower flowers development
LF2 vs LF1
Ll-miRn22 TATCATTCCATACATCGTCTCG new 0.71 0.0000 0.0004 Putative disease resistance RPP13-like protein 1
Ll-miR401 TTGACAGAAGAGAGTGAGCAC gma-miR156k 0.61 0.0003 0.0032 Squamosa promoter-binding-like protein 2
Ll-miR265 TCGGACCAGGCTTCATTCCTT ata-miR166c-3p 0.61 0.0001 0.0007 Homeobox-leucine zipper protein ATHB-15
Ll-miRn27 ATTAGATCATGTGGCAGTTTCACC new 0.51 0.0028 0.0241 U-box domain-containing protein 33
Ll-miR454 TTTGGATTGAAGGGAGCTCTT aly-miR159b-3p 0.47 0.0000 0.0000 Transcription factor GAMYB
Ll-miR124 TGACAGAAGAGAGTGAGCAC ama-miR156 0.43 0.0021 0.0193 Squamosa promoter-binding-like protein 13B
Ll-miR247 TCGCTTGGTGCAGGTCGGGAA aly-miR168a-5p −0.68 0.0000 0.0000 AGO1
Ll-miR102 CGCTGTCCATCCTGAGTTTCA bra-miR390-3p −0.69 0.0000 0.0003 TAS3
Ll-miR115 CTCGTTGTCTGTTCGACCTTG ppe-miR858 −0.76 0.0000 0.0001 Transcription repressor MYB5
Ll-miR53 ATCATGCTATCCCTTTGGATT gma-miR393c-3p −1.02 0.0034 0.0278 Midasin-like
Ll-miR82 CCCGCCTTGCATCAACTGAAT aly-miR168a-3p −1.31 0.0000 0.0000 FAD-linked sulfhydryl oxidase ERV1
Ll-miRn10 ATGTTGTGATGGGAATCAATG new −1.37 0.0000 0.0000 CBL-interacting Ser/Thr -protein kinase 6
Ll-miRn3 TGAAGAGGGAGGGAGACTGATG new −1.43 0.0006 0.0060 SRC2 homolog
Ll-miR198 GTTCAATAAAGCTGTGGGAA osa-miR396a-3p −1.75 0.0000 0.0000 ECERIFERUM 1
Ll-miRn31 GCGTACCAGGAGCCATGCATG new −1.99 0.0001 0.0007 Calcium-transporting ATPase 4
Ll-miR200 GTTCAATAAAGCTGTGGGAAG aly-miR396a-3p −2.00 0.0000 0.0000 ECERIFERUM 1
Ll-miR155 GCTCAAGAAAGCTGTGGGAGA gma-miR396b-3p −2.04 0.0000 0.0000 Lysine-specific demethylase JMJ25
Ll-miR199 GTTCAATAAAGCTGTGGGAAA ata-miR396e-3p −2.31 0.0000 0.0000 ECERIFERUM 1
LF3 vs LF2
Ll-miR258 TCGGACCAGGCTTCATTCCCG cpa-miR166d 0.91 0.0000 0.0001 Homeobox-leucine zipper protein ATHB-15
Ll-miRn1 TTGCCAATTCCACCCATGCCTA new 0.87 0.0000 0.0008 SUPPRESSOR OF GENE SILENCING 3
Ll-miR9 AAGCTCAGGAGGGATAGCGCC aly-miR390a-5p 0.78 0.0005 0.0100 TAS3
Ll-miR118 CTGAAGTGTTTGGGGGAACTC aly-miR395d-3p 0.70 0.0000 0.0007 ATP sulfurylase 1, chloroplastic
Ll-miR264 TCGGACCAGGCTTCATTCCTC aqc-miR166a 0.66 0.0037 0.0401 Homeobox-leucine zipper protein ATHB-15
Ll-miRn22 TATCATTCCATACATCGTCTCG new 0.46 0.0032 0.0401 Putative disease resistance RPP13-like protein 1
Ll-miR384 TTCCACAGCTTTCTTGAACTT aly-miR396b-5p −0.35 0.0033 0.0401 MPE-cyclase
Ll-miR115 CTCGTTGTCTGTTCGACCTTG ppe-miR858 −0.59 0.0048 0.0426 Transcription repressor MYB5
Ll-miR200 GTTCAATAAAGCTGTGGGAAG aly-miR396a-3p −0.62 0.0000 0.0000 ECERIFERUM 1
Ll-miR108 CGTGTTCTCAGGTCGCCCCTG ppe-miR398b −1.08 0.0044 0.0426 Plastocyanin
Ll-miR60 ATGCACTGCCTCTTCCCTGGC ahy-miR408-3p −1.09 0.0024 0.0385 Basic blue protein
LF4 vs LF3
ND
Upper flowers development
UF2 vs UF1
Ll-miR119 TGAAGTGTTTGGGGGAACTCC sly-miR395a 1.22 0.0000 0.0019 ATP sulfurylase 1, chloroplastic
Ll-miR452 TTTGGATTGAAGGGAGCTCTC lus-miR159b 0.74 0.0001 0.0019 Gamma-glutamyl peptidase 5
Ll-miR118 CTGAAGTGTTTGGGGGAACTC aly-miR395d-3p 0.64 0.0001 0.0019 ATP sulfurylase 1, chloroplastic
Ll-miR177 GGAATGTTGTCTGGCTCGAGG aly-miR166a-5p 0.50 0.0002 0.0033 Transcription factor RADIALIS
Ll-miR174 GGAATGTTGGCTGGCTCGAGG mtr-miR166e-5p −0.45 0.0002 0.0033 Nucleolar GTP-binding protein 1
Ll-miR285 TGAAGCTGCCAGCATGATCTTA mdm-miR167h −0.56 0.0023 0.0286 Auxin response factor 6
Ll-miRn10 ATGTTGTGATGGGAATCAATG new −0.96 0.0008 0.0117 CBL-interacting Ser/Thr-protein kinase 6
Ll-miR155 GCTCAAGAAAGCTGTGGGAGA gma-miR396b-3p −1.17 0.0000 0.0000 Lysine-specific demethylase JMJ25
UF3 vs UF2
Ll-miR258 TCGGACCAGGCTTCATTCCCG cpa-miR166d 0.70 0.0022 0.0323 Homeobox-leucine zipper protein ATHB-15
Ll-miR247 TCGCTTGGTGCAGGTCGGGAA aly-miR168a-5p −0.40 0.0005 0.0113 AGO1
Ll-miR102 CGCTGTCCATCCTGAGTTTCA bra-miR390-3p −0.96 0.0000 0.0004 TAS3
Ll-miR199 GTTCAATAAAGCTGTGGGAAA ata-miR396e-3p −0.97 0.0000 0.0001 ECERIFERUM 1
Ll-miR60 ATGCACTGCCTCTTCCCTGGC ahy-miR408-3p −1.01 0.0008 0.0145 Basic blue protein
Ll-miR200 GTTCAATAAAGCTGTGGGAAG aly-miR396a-3p −1.02 0.0000 0.0000 ECERIFERUM 1
Ll-miR100 CGCTATCCATCCTGAGTTTCA aly-miR390a-3p −1.10 0.0001 0.0021 TAS3
Ll-miR99 CGCTATCCATCCTGAGTTTC gma-miR390a-3p −1.16 0.0014 0.0228 TAS3
Ll-miR53 ATCATGCTATCCCTTTGGATT gma-miR393c-3p −1.19 0.0001 0.0017 Midasin-like
Ll-miR155 GCTCAAGAAAGCTGTGGGAGA gma-miR396b-3p −1.45 0.0000 0.0000 Lysine-specific demethylase JMJ25
UF4 vs UF3
Ll-miR438 TTGTGTTCTCAGGTCACCCCT stu-miR398b-3p 1.09 0.0003 0.0098 Probable nucleoredoxin 1
Ll-miR281 TGAAGCTGCCAGCATGATCTGA ata-miR167b-5p 0.92 0.0001 0.0048 Auxin response factor 6 and ARF8
Ll-miR445 TTTGGACTGAAGGGAGCTCCT atr-miR319b 0.84 0.0000 0.0009 Transcription factor TCP4
Ll-miR9 AAGCTCAGGAGGGATAGCGCC aly-miR390a-5p 0.78 0.0004 0.0098 TAS3
Ll-miR346 TGGAGAAGCAGGGCACGTGCA aly-miR164a-5p 0.73 0.0029 0.0359 CUP-SHAPED COTYLEDON 2
Ll-miR280 TGAAGCTGCCAGCATGATCTG atr-miR167 0.66 0.0010 0.0207 Auxin response factor 6 and ARF8
Ll-miR130 CTTGGACTGAAGGGAGCTCCC ppt-miR319c 0.65 0.0001 0.0034 Transcription factor MYB33
Ll-miR115 CTCGTTGTCTGTTCGACCTTG ppe-miR858 −0.67 0.0019 0.0333 Transcription repressor MYB5
Ll-miR100 CGCTATCCATCCTGAGTTTCA aly-miR390a-3p −0.70 0.0025 0.0337 TAS3
Ll-miRn11 TAAAGACCTCATTCTCTCATG new −0.83 0.0037 0.0386 Vacuolar protein sorting-associated protein 62
Ll-miR99 CGCTATCCATCCTGAGTTTC gma-miR390a-3p −0.86 0.0038 0.0386 TAS3
Ll-miR102 CGCTGTCCATCCTGAGTTTCA bra-miR390-3p −0.91 0.0025 0.0337 TAS3