Table 6.
Differentially expressed miRNAs identified in comparisons between pedicels collected from abscised or non-abscised flowers (FPAB vs FPNAB) with padj < 0.05.
| Flower Pedicels | ||||||
|---|---|---|---|---|---|---|
| ID | miRNA sequence | miRBase annotation | log2FC | p-value | padj | Target description (psRNAtarget/degradome) |
| FPAB vs FPNAB | ||||||
| Ll-miR281 | TGAAGCTGCCAGCATGATCTGA | ata-miR167b-5p | 4.77 | 0.0000 | 0.0000 | Auxin response factor 6 and ARF8 |
| Ll-miR39 | AGATCATGTGGCAGTTTCACC | ahy-miR167-3p | 4.65 | 0.0000 | 0.0000 | Transcription repressor OFP14 |
| Ll-miR280 | TGAAGCTGCCAGCATGATCTG | atr-miR167 | 3.73 | 0.0000 | 0.0000 | Auxin response factor 6 and ARF8 |
| Ll-miR283 | TGAAGCTGCCAGCATGATCTGG | aly-miR167d-5p | 3.19 | 0.0000 | 0.0000 | Auxin response factor 6 and ARF8 |
| Ll-miR276 | TGAAGCTGCCAGCATGATCT | bna-miR167d | 2.74 | 0.0000 | 0.0005 | Auxin response factor 6 and ARF8 |
| Ll-miRn18 | AATAGGGCACATCTCTCATGG | new | 2.26 | 0.0001 | 0.0006 | E3 ubiquitin-protein ligase HOS1 |
| Ll-miR193 | GTCGTTGTAGTATAGTGG | gma-miR6300 | 2.18 | 0.0001 | 0.0006 | - |
| Ll-miR438 | TTGTGTTCTCAGGTCACCCCT | stu-miR398b-3p | 2.09 | 0.0000 | 0.0000 | Probable nucleoredoxin 1 |
| Ll-miR325 | TGCCAAAGGAGAGTTGCCCTG | aly-miR399b-3p | 1.95 | 0.0000 | 0.0000 | Inorganic phosphate transporter 1–4 |
| Ll-miR364 | TGTGTTCTCAGGTCACCCCTT | aly-miR398a-3p | 1.94 | 0.0010 | 0.0071 | Superoxide dismutase [Cu-Zn] |
| Ll-miR415 | TTGAGCCGTGCCAATATCACG | aly-miR171b-3p | 1.80 | 0.0017 | 0.0117 | Scarecrow-like protein 6 |
| Ll-miR366 | TGTGTTCTCAGGTCGCCCCTG | aqc-miR398b | 1.66 | 0.0005 | 0.0042 | Superoxide dismutase [Cu-Zn] |
| Ll-miR260 | TCGGACCAGGCTTCATTCCCT | csi-miR166d | 1.07 | 0.0078 | 0.0450 | Homeobox-leucine zipper protein ATHB-14 |
| Ll-miR273 | TCTCGTTGTCTGTTCGACCTT | cme-miR858 | 1.02 | 0.0037 | 0.0223 | Transcription factor MYB78 |
| Ll-miR402 | TTGACAGAAGATAGAGAGC | hbr-miR156 | −0.89 | 0.0008 | 0.0060 | Squamosa promoter-binding protein 1 |
| Ll-miRn21 | TGAGCATGAGGATAAGGACGG | new | −1.18 | 0.0000 | 0.0000 | Tetratricopeptide repeat protein 1 |
| Ll-miR198 | GTTCAATAAAGCTGTGGGAA | osa-miR396a-3p | −1.24 | 0.0024 | 0.0159 | ECERIFERUM 1 |
| Ll-miRn5 | TGGAATAGTGAATGAGACATC | new | −1.25 | 0.0003 | 0.0024 | Probable cinnamyl alcohol dehydrogenase 9 |
| Ll-miR102 | CGCTGTCCATCCTGAGTTTCA | bra-miR390-3p | −1.27 | 0.0003 | 0.0027 | TAS3 |
| Ll-miR199 | GTTCAATAAAGCTGTGGGAAA | ata-miR396e-3p | −1.49 | 0.0005 | 0.0039 | ECERIFERUM 1 |
| Ll-miR200 | GTTCAATAAAGCTGTGGGAAG | aly-miR396a-3p | −1.61 | 0.0001 | 0.0009 | ECERIFERUM 1 |
| Ll-miR44 | AGCTGCTGACTCGTTGGTTCA | mtr-miR4414a-5p | −1.76 | 0.0012 | 0.0084 | Non-specific phospholipase C1 |
| Ll-miR151 | GCGTATGAGGAGCCAAGCATA | gma-miR160a-3p | −1.90 | 0.0007 | 0.0055 | E3 ubiquitin-protein ligase RFWD3 |
| Ll-miR57 | TGAAGTGTTTGGGGGAACTC | gma-miR395i | −2.01 | 0.0000 | 0.0000 | ATP sulfurylase 1, chloroplastic |
| Ll-miR170 | GGAACGTTGGCTGGCTCGAGG | ata-miR166c-5p | −2.02 | 0.0072 | 0.0425 | Probable methyltransferase PMT21 |
| Ll-miR119 | TGAAGTGTTTGGGGGAACTCC | sly-miR395a | −2.23 | 0.0000 | 0.0000 | ATP sulfurylase 1, chloroplastic |
| Ll-miRn3 | TGAAGAGGGAGGGAGACTGATG | new | −2.26 | 0.0027 | 0.0171 | SRC2 homolog |
| Ll-miR118 | CTGAAGTGTTTGGGGGAACTC | aly-miR395d-3p | −2.47 | 0.0000 | 0.0000 | ATP sulfurylase 1, chloroplastic |
| Ll-miR99 | CGCTATCCATCCTGAGTTTC | gma-miR390a-3p | −2.65 | 0.0001 | 0.0006 | TAS3 |
| Ll-miR100 | CGCTATCCATCCTGAGTTTCA | aly-miR390a-3p | −2.75 | 0.0000 | 0.0000 | TAS3 |
| Ll-miR162 | GCTCTCTAAGCTTCTGTCATCA | aly-miR157b-3p | −2.90 | 0.0000 | 0.0003 | Dr1 homolog |
| Ll-miR94 | CGATGTTGGTGAGGTTCAATC | gma-miR171k-5p | −3.01 | 0.0000 | 0.0000 | Transcription factor MYB4 |
| Ll-miRn32 | AAGGGTTGTTTACAGAGTTTA | new | −3.18 | 0.0000 | 0.0000 | 26S proteasome regulatory subunit 7 |
| Ll-miR174 | GGAATGTTGGCTGGCTCGAGG | mtr-miR166e-5p | −3.46 | 0.0000 | 0.0000 | Nucleolar GTP-binding protein 1 |