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. 2019 Nov 13;93(23):e01236-19. doi: 10.1128/JVI.01236-19

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Copyright © 2019 American Society for Microbiology.

This article is made available via the PMC Open Access Subset for unrestricted noncommercial re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.

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FIG 5 — (A) Recombination analysis of the genomes of DcCoV-HKU23, BCoV-DB2, PHEV, HCoV-OC43, RbCoV-HKU14, equine CoV-NC99 (EqCoV-NC99), and rodent CoV (RtMm-CoV-1/IM2014). Bootscan analysis was performed by Simplot, version 3.5.1, using a 50% consensus sequence of DcCoV-HKU23 collected in Nigeria with the genotype C2/C_outlier/C3 as the query. (B) Phylogenetic trees from representative regions were constructed by the maximum likelihood method using IQ-Tree, version 1.6.8. Trees were midpoint rooted. The CoVs (accession numbers) used in this analysis were as follows: DcCoV-HKU23/362F (KF906250.1), BCoV-DB2 (DQ811784.2), PHEV (KY994645), HCoV-OC43 (AY391777.1), RbCoV-HKU14 (JN874559), equine CoV-NC99 (EF446615), and rodent CoV-IM2014 (KY370052).