Table I.
Differentially expressed lncRNAs, miRNAs and mRNAs between HCC and adjacent normal tissues.
| mRNA | miRNA | lncRNA | ||||||
|---|---|---|---|---|---|---|---|---|
| Symbol | FDR | logFC | Symbol | FDR | logFC | Symbol | FDR | logFC |
| HAMP | 3.03E-15 | −4.16 | hsa-miR-9-5p | 2.36E-15 | 4.35 | KIAA0087 | 6.00E-04 | 0.86 |
| KCNN2 | 4.13E-24 | −3.99 | hsa-miR-431-5p | 1.71E-13 | 4.02 | SNHG9 | 1.73E-03 | −1.44 |
| CXCL14 | 7.95E-28 | −3.98 | hsa-miR-301b | 8.99E-13 | 3.87 | LINC02203 | 2.01E-03 | 1.81 |
| CNDP1 | 1.25E-19 | −3.75 | hsa-miR-216b-5p | 1.59E-12 | 3.87 | H19 | 3.55E-03 | 0.97 |
| FCN2 | 6.81E-23 | −3.64 | hsa-miR-483-3p | 1.51E-11 | 3.61 | WWC2-AS2 | 5.30E-03 | 0.82 |
| IGFBP3 | 1.61E-16 | −2.08 | hsa-miR-7974 | 1.45E-10 | 3.48 | HNF1A-AS1 | 1.00E-02 | 0.87 |
| RRM2 | 1.78E-15 | 2.25 | hsa-miR-323a-3p | 3.79E-10 | 3.37 | TTTY6B | 1.10E-02 | 0.70 |
| STEAP3 | 4.73E-13 | −1.48 | hsa-miR-483-5p | 4.78E-10 | 3.29 | FAM138B | 1.27E-02 | 1.16 |
| ALDH1B1 | 9.83E-12 | −1.16 | hsa-miR-200c-3p | 8.07E-10 | 3.25 | WEE2-AS1 | 1.30E-02 | 0.54 |
| ACSL4 | 1.83E-11 | 2.81 | hsa-miR-183-5p | 1.92E-09 | 3.15 | HLA-F-AS1 | 1.38E-02 | −0.90 |
| CCNE2 | 7.91E-10 | 1.42 | hsa-miR-410-3p | 2.90E-09 | 3.11 | LINC00284 | 1.80E-02 | −0.61 |
| GLS2 | 1.03E-09 | −2.40 | hsa-miR-182-5p | 8.38E-07 | 2.53 | SNHG15 | 1.83E-02 | −0.54 |
| CA2 | 6.67E-09 | −1.24 | hsa-miR-34c-5p | 3.03E-06 | 2.46 | DLGAP1-AS1 | 2.01E-02 | −0.71 |
| GADD45B | 7.04E-09 | −1.25 | hsa-miR-7-5p | 3.77E-05 | 2.14 | KMT2E-AS1 | 2.12E-02 | −0.68 |
| ACAA2 | 2.51E-08 | −1.01 | hsa-miR-299-3p | 4.17E-05 | 2.11 | LINC00339 | 2.14E-02 | −0.72 |
| FAS | 2.03E-07 | −1.03 | hsa-miR-15b-5p | 1.37E-04 | 1.94 | MAP3K14-AS1 | 2.19E-02 | 0.76 |
| ACSL1 | 6.24E-07 | −1.09 | hsa-miR-30c-2-3p | 1.97E-03 | −1.61 | LINC00909 | 2.72E-02 | −0.60 |
| THBS1 | 1.46E-06 | −1.56 | hsa-miR-149-5p | 9.85E-03 | 1.35 | SRRM2-AS1 | 3.78E-02 | −0.99 |
| ACADSB | 1.30E-05 | −1.03 | hsa-miR-214-5p | 1.89E-02 | −1.22 | LINC00928 | 4.00E-02 | −0.75 |
| CPS1 | 1.75E-03 | −1.24 | hsa-miR-128-3p | 2.36E-02 | 1.17 | RUSC1-AS1 | 4.06E-02 | −1.03 |
lncRNAs, long non-coding RNAs; miRNAs, microRNAs; HCC, hepatocellular carcinoma; FC, fold change; FDR, false discovery rate; CCNE2, cyclin E2; RRM2, ribonucleotide reductase M2 subunit.