Table 2.
Read counts, relative abundance and coverage per genomic compartment and dataset
| 1Df | 2D | Illumina PE | |
|---|---|---|---|
| CP | 28,530 | 8157 | 7,732,624 |
| 29.85% | 31.56% | 31.28% | |
| 814.7X (± 176.2X) | 214.9X (± 42.1X) | 7411.2X (± 1177X) | |
| MT | 1937 | 511 | 742,149 |
| 2.03% | 1.98% | 3.00% | |
| 41.9X (± 27.2X) | 10.5X (± 12.2X) | 1084.9X (± 258X) | |
| BACT | 49,630 | 13,786 | 11,094,869 |
| 51.93% | 53.34% | 44.89% | |
| 5.6X (± 7.7X) | 3.2X (± 3.5X) | 160.0X (± 285X) | |
| NU | 15,466 | 3390 | 5,148,292 |
| 16.18% | 13.12% | 20.83% | |
| 1.6X (± 1.8X) | 1.1X (± 1.1X) | 61.2X (± 70X) |
Read counts and mean coverage were determined via mapping on the curated chloroplast and mitochondrion genomes or the hybrid 1Df assembly for the nuclear and bacterial compartments. Relative abundance was computed from total read counts for a given dataset. Mapping of nanopore data was conducted with filtered reads (> 1000 bp). Numbers in parenthesis represent coverage standard deviation. Note the low/uneven coverage of the larger nuclear and bacterial genomes. Genome abbreviation as follows, CP = Chloroplast, MT = Mitochondrion, BACT = Bacterial, NU = Nuclear