Table 4.
Mean CLR OTUs for each of 267 bacterial species in the overall cohort and by age categories, and its linear correlation with age
| Rank Order* | OTU Label | Culture Status | Socransky Complex | Overall Cohort (N = 1219) |
Age Categories (years) | Linear Correlation | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| CLR OTU Mean (SE) |
50–59 (N = 239) CLR OTU Mean (SE) |
60–69 (N = 554) CLR OTU Mean (SE) |
≥70 (N = 426) CLR OTU Mean (SE) |
p-value | Pearson r | p-value | ||||
| 1 | Veillonella dispar | N | – | 8.25 (0.06) | 8.23 (0.13) | 8.11 (0.09) | 8.45 (0.10) | 0.045 | 0.08 | 0.008 |
| 2 | Streptococcus oralis | N | Y | 8.06 (0.05) | 8.40 (0.11) | 8.06 (0.08) | 7.87 (0.09) | 0.002 | −0.10 | <.001 |
| 3 | Veillonella parvula | N | P | 7.60 (0.07) | 7.48 (0.15) | 7.45 (0.09) | 7.86 (0.11) | 0.014 | 0.10 | 0.001 |
| 4 | Fusobacterium nucleatum_subsp._vincentii | N | O | 6.43 (0.08) | 6.21 (0.17) | 6.48 (0.11) | 6.50 (0.13) | 0.356 | 0.02 | 0.587 |
| 5 | Selenomonas sputigena | N | – | 5.63 (0.08) | 5.34 (0.17) | 5.44 (0.12) | 6.03 (0.14) | 0.001 | 0.10 | <.001 |
| 6 | Fusobacterium nucleatum_subsp._animalis | N | – | 5.39 (0.07) | 5.29 (0.14) | 5.29 (0.10) | 5.57 (0.12) | 0.136 | 0.10 | 0.106 |
| 7 | Campylobacter gracilis | N | O | 5.19 (0.05) | 5.02 (0.11) | 5.15 (0.07) | 5.33 (0.09) | 0.052 | 0.10 | 0.016 |
| 8 | Fusobacterium nucleatum_subsp._polymorphum | N | O | 5.19 (0.07) | 5.36 (0.15) | 5.28 (0.09) | 4.97 (0.12) | 0.052 | −0.10 | 0.019 |
| 9 | Prevotella oris | N | – | 5.08 (0.09) | 5.25 (0.18) | 5.05 (0.13) | 5.03 (0.16) | 0.646 | −0.10 | 0.118 |
| 10 | Streptococcus sanguinis | N | Y | 4.91 (0.07) | 5.57 (0.15) | 5.04 (0.10) | 4.38 (0.13) | <.001* | −0.18 | <.001* |
| 11 | Corynebacterium matruchotii | N | – | 4.81 (0.07) | 4.87 (0.17) | 4.86 (0.10) | 4.70 (0.12) | 0.550 | −0.04 | 0.171 |
| 12 | Selenomonas noxia | N | – | 4.81 (0.08) | 4.63 (0.18) | 4.69 (0.11) | 5.06 (0.13) | 0.049 | 0.10 | <.001 |
| 13 | Prevotella nigrescens | N | O | 4.31 (0.10) | 4.48 (0.21) | 4.28 (0.15) | 4.26 (0.18) | 0.714 | −0.03 | 0.370 |
| 14 | Parvimonas micra | N | – | 4.29 (0.08) | 4.08 (0.17) | 4.35 (0.11) | 4.33 (0.12) | 0.401 | 0.00 | 0.967 |
| 15 | Rothia dentocariosa | U | – | 4.28 (0.09) | 4.46 (0.19) | 4.38 (0.13) | 4.04 (0.15) | 0.113 | −0.10 | 0.008 |
| 16 | Fusobacterium sp._oral_taxon_203 | N | – | 4.23 (0.10) | 4.08 (0.22) | 4.36 (0.15) | 4.16 (0.17) | 0.497 | −0.01 | 0.713 |
| 17 | Streptococcus gordonii | N | Y | 4.19 (0.08) | 3.93 (0.18) | 4.15 (0.12) | 4.40 (0.13) | 0.090 | 0.04 | 0.039 |
| 18 | Granulicatella adiacens | N | – | 4.15 (0.06) | 4.23 (0.14) | 4.11 (0.09) | 4.15 (0.10) | 0.749 | 0.00 | 0.991 |
| 19 | Streptococcus intermedius | N | Y | 3.94 (0.10) | 4.33 (0.21) | 3.86 (0.15) | 3.81 (0.16) | 0.119 | −0.10 | 0.016 |
| 20 | Actinomyces naeslundii | N | B | 3.85 (0.06) | 4.00 (0.14) | 3.88 (0.09) | 3.72 (0.11) | 0.230 | −0.10 | 0.008 |
| 21 | TM7_[G-1] sp._oral_taxon_346 | P | – | 3.78 (0.09) | 3.63 (0.19) | 3.90 (0.12) | 3.70 (0.16) | 0.421 | 0.00 | 0.917 |
| 22 | Haemophilus parainfluenzae | N | – | 3.74 (0.09) | 4.21 (0.19) | 3.73 (0.13) | 3.48 (0.15) | 0.014 | −0.10 | 0.004 |
| 23 | Fusobacterium naviforme | N | – | 3.58 (0.08) | 3.61 (0.18) | 3.62 (0.12) | 3.52 (0.14) | 0.852 | −0.03 | 0.294 |
| 24 | Dialister invisus | N | – | 3.51 (0.08) | 3.12 (0.16) | 3.50 (0.11) | 3.75 (0.13) | 0.013 | 0.10 | 0.003 |
| 25 | Capnocytophaga gingivalis | N | G | 3.36 (0.08) | 3.39 (0.18) | 3.45 (0.11) | 3.23 (0.13) | 0.423 | −0.04 | 0.172 |
| 26 | Streptococcus cristatus | N | – | 3.27 (0.07) | 3.17 (0.16) | 3.27 (0.11) | 3.32 (0.13) | 0.776 | 0.01 | 0.754 |
| 27 | Gemella morbillorum | N | – | 3.14 (0.09) | 3.37 (0.20) | 3.35 (0.13) | 2.73 (0.16) | 0.004 | −0.11 | <.001* |
| 28 | Streptococcus salivarius | U | – | 3.02 (0.08) | 3.05 (0.18) | 2.79 (0.13) | 3.29 (0.14) | 0.028 | 0.10 | 0.090 |
| 29 | TM7_[G-1] sp._oral_taxon_349 | N | – | 2.99 (0.10) | 2.71 (0.22) | 3.15 (0.14) | 2.95 (0.18) | 0.251 | 0.04 | 0.204 |
| 30 | Bacteroidales_[G-2] sp._oral_taxon_274 | N | – | 2.96 (0.10) | 2.47 (0.22) | 3.15 (0.14) | 3.00 (0.16) | 0.030 | 0.03 | 0.328 |
| 31 | Campylobacter showae | P | O | 2.89 (0.08) | 3.00 (0.17) | 2.81 (0.11) | 2.93 (0.14) | 0.609 | −0.01 | 0.685 |
| 32 | Veillonella atypica | N | – | 2.88 (0.09) | 2.47 (0.20) | 2.56 (0.13) | 3.53 (0.14) | <.001* | 0.16 | <.001* |
| 33 | Eikenella corrodens | N | – | 2.87 (0.07) | 3.00 (0.15) | 3.07 (0.10) | 2.53 (0.12) | 0.001 | −0.11 | <.001* |
| 34 | Capnocytophaga leadbetteri | N | – | 2.86 (0.09) | 2.87 (0.20) | 2.93 (0.13) | 2.78 (0.16) | 0.758 | −0.03 | 0.334 |
| 35 | Fretibacterium sp._oral_taxon_360 | N | – | 2.81 (0.11) | 2.29 (0.23) | 2.89 (0.16) | 3.00 (0.19) | 0.048 | 0.04 | 0.148 |
| 36 | Prevotella sp._oral_taxon_317 | N | – | 2.73 (0.10) | 2.79 (0.22) | 2.68 (0.16) | 2.76 (0.18) | 0.907 | −0.00 | 0.965 |
| 37 | Capnocytophaga granulosa | U | – | 2.72 (0.09) | 2.39 (0.21) | 2.84 (0.13) | 2.75 (0.16) | 0.189 | 0.04 | 0.152 |
| 38 | Alloprevotella tannerae | N | – | 2.71 (0.12) | 2.69 (0.24) | 2.78 (0.17) | 2.64 (0.20) | 0.865 | 0.01 | 0.788 |
| 39 | Kingella oralis | P | – | 2.66 (0.08) | 2.66 (0.19) | 2.65 (0.11) | 2.68 (0.14) | 0.983 | −0.01 | 0.847 |
| 40 | TM7_[G-1] sp._oral_taxon_952 | U | – | 2.58 (0.10) | 2.80 (0.22) | 2.83 (0.14) | 2.12 (0.16) | 0.002 | −0.10 | <.001 |
| 41 | Selenomonas artemidis | N | – | 2.51 (0.11) | 2.77 (0.24) | 2.39 (0.16) | 2.52 (0.19) | 0.419 | −0.00 | 0.957 |
| 42 | Campylobacter concisus | N | G | 2.41 (0.06) | 2.22 (0.14) | 2.37 (0.10) | 2.56 (0.11) | 0.152 | 0.10 | 0.036 |
| 43 | Actinomyces oris | N | B | 2.36 (0.08) | 2.63 (0.17) | 2.37 (0.11) | 2.18 (0.13) | 0.104 | −0.10 | 0.021 |
| 44 | Treponema socranskii | N | – | 2.22 (0.07) | 1.84 (0.17) | 2.16 (0.11) | 2.52 (0.13) | 0.004 | 0.10 | <.001 |
| 45 | Cardiobacterium hominis | N | – | 2.21 (0.08) | 2.50 (0.19) | 2.45 (0.12) | 1.75 (0.14) | <.001* | −0.11 | <.001 |
| 46 | Leptotrichia wadei | N | – | 2.15 (0.10) | 2.21 (0.23) | 1.94 (0.16) | 2.38 (0.18) | 0.159 | 0.03 | 0.305 |
| 47 | Anaeroglobus geminatus | P | – | 2.12 (0.10) | 1.32 (0.22) | 1.94 (0.15) | 2.79 (0.18) | <.001* | 0.17 | <.001* |
| 48 | Gemella haemolysans | N | – | 2.11 (0.09) | 2.42 (0.20) | 2.10 (0.13) | 1.96 (0.14) | 0.161 | −0.10 | 0.018 |
| 49 | Capnocytophaga sputigena | N | G | 2.11 (0.09) | 2.31 (0.21) | 2.23 (0.13) | 1.84 (0.17) | 0.113 | −0.10 | 0.094 |
| 50 | Rothia aeria | N | – | 2.11 (0.09) | 2.49 (0.20) | 2.42 (0.14) | 1.48 (0.15) | <.001* | −0.15 | <.001* |
| 51 | Bergeyella sp._oral_taxon_322 | N | – | 2.08 (0.07) | 2.38 (0.16) | 2.11 (0.10) | 1.87 (0.11) | 0.028 | −0.10 | 0.008 |
| 52 | Leptotrichia hongkongensis | N | – | 2.02 (0.09) | 2.02 (0.21) | 1.94 (0.14) | 2.13 (0.16) | 0.660 | 0.03 | 0.337 |
| 53 | Rothia mucilaginosa | U | – | 1.95 (0.08) | 1.79 (0.17) | 1.90 (0.11) | 2.09 (0.13) | 0.321 | 0.03 | 0.237 |
| 54 | Prevotella melaninogenica | N | – | 1.90 (0.08) | 1.75 (0.17) | 1.78 (0.12) | 2.14 (0.14) | 0.095 | 0.10 | 0.049 |
| 55 | Actinomyces sp._oral_taxon_169 | N | – | 1.89 (0.09) | 2.28 (0.20) | 1.96 (0.13) | 1.59 (0.15) | 0.016 | −0.10 | <.001 |
| 56 | Tannerella forsythia | N | R | 1.87 (0.10) | 1.50 (0.21) | 1.80 (0.14) | 2.18 (0.17) | 0.042 | 0.10 | 0.029 |
| 57 | Selenomonas sp._oral_taxon_136 | N | – | 1.86 (0.08) | 1.21 (0.18) | 1.76 (0.12) | 2.36 (0.15) | <.001* | 0.16 | <.001* |
| 58 | Catonella morbi | N | – | 1.86 (0.08) | 2.08 (0.17) | 1.89 (0.11) | 1.69 (0.13) | 0.184 | −0.10 | 0.020 |
| 59 | Prevotella denticola | N | – | 1.74 (0.10) | 1.46 (0.23) | 1.60 (0.15) | 2.10 (0.18) | 0.040 | 0.10 | 0.006 |
| 60 | Neisseria sicca | N | – | 1.72 (0.11) | 1.58 (0.25) | 1.88 (0.16) | 1.60 (0.18) | 0.416 | −0.01 | 0.678 |
| 61 | Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brac | U | – | 1.70 (0.08) | 2.08 (0.16) | 1.72 (0.12) | 1.47 (0.14) | 0.030 | −0.10 | 0.003 |
| 62 | Neisseria elongata | N | – | 1.63 (0.10) | 1.95 (0.25) | 1.81 (0.15) | 1.22 (0.17) | 0.012 | −0.10 | 0.008 |
| 63 | Cardiobacterium valvarum | U | – | 1.49 (0.09) | 1.60 (0.21) | 1.63 (0.13) | 1.26 (0.14) | 0.137 | −0.10 | 0.044 |
| 64 | Porphyromonas sp._oral_taxon_279 | P | – | 1.49 (0.09) | 1.46 (0.20) | 1.62 (0.13) | 1.34 (0.16) | 0.394 | −0.02 | 0.494 |
| 65 | Selenomonas infelix | U | – | 1.48 (0.08) | 1.56 (0.17) | 1.44 (0.12) | 1.50 (0.15) | 0.871 | −0.01 | 0.709 |
| 66 | Leptotrichia sp._oral_taxon_212 | U | – | 1.44 (0.09) | 1.63 (0.21) | 1.64 (0.13) | 1.08 (0.16) | 0.013 | −0.10 | 0.011 |
| 67 | Actinomyces sp._oral_taxon_180 | N | – | 1.44 (0.07) | 1.54 (0.15) | 1.45 (0.10) | 1.38 (0.11) | 0.704 | −0.03 | 0.235 |
| 68 | Prevotella sp._oral_taxon_300 | N | – | 1.43 (0.09) | 1.31 (0.19) | 1.24 (0.13) | 1.75 (0.15) | 0.025 | 0.10 | 0.007 |
| 69 | Prevotella maculosa | N | – | 1.42 (0.08) | 1.07 (0.17) | 1.32 (0.11) | 1.75 (0.13) | 0.003 | 0.10 | 0.001 |
| 70 | Streptococcus mutans | N | – | 1.39 (0.11) | 0.98 (0.24) | 1.19 (0.16) | 1.87 (0.20) | 0.005 | 0.10 | <.001 |
| 71 | Actinomyces massiliensis | N | B | 1.38 (0.07) | 1.68 (0.17) | 1.50 (0.10) | 1.05 (0.11) | 0.002 | −0.12 | <.001* |
| 72 | Fretibacterium fastidiosum | N | – | 1.30 (0.10) | 1.12 (0.22) | 1.25 (0.15) | 1.47 (0.17) | 0.393 | 0.04 | 0.173 |
| 73 | Veillonellaceae_[G-1] sp._oral_taxon_150 | N | – | 1.23 (0.09) | 0.74 (0.20) | 1.00 (0.13) | 1.81 (0.16) | <.001* | 0.14 | <.001* |
| 74 | Neisseria flavescens | N | – | 1.23 (0.10) | 0.98 (0.21) | 1.28 (0.14) | 1.30 (0.17) | 0.425 | 0.02 | 0.533 |
| 75 | Prevotella oulorum | P | – | 1.22 (0.09) | 1.23 (0.20) | 1.00 (0.13) | 1.50 (0.15) | 0.041 | 0.10 | 0.059 |
| 76 | Streptococcus anginosus | N | Y | 1.17 (0.11) | 1.03 (0.23) | 0.92 (0.16) | 1.56 (0.19) | 0.024 | 0.10 | 0.013 |
| 77 | Lachnoanaerobaculum saburreum | N | – | 1.07 (0.08) | 0.85 (0.18) | 1.12 (0.12) | 1.13 (0.14) | 0.384 | 0.04 | 0.208 |
| 78 | Veillonellaceae_[G-1] sp._oral_taxon_155 | N | – | 1.00 (0.09) | 0.66 (0.20) | 0.84 (0.13) | 1.39 (0.15) | 0.004 | 0.10 | <.001 |
| 79 | Selenomonas sp._oral_taxon_892 | L | – | 0.98 (0.08) | 1.18 (0.19) | 1.05 (0.12) | 0.76 (0.15) | 0.148 | −0.10 | 0.030 |
| 80 | Actinomyces johnsonii | N | B | 0.97 (0.07) | 1.18 (0.16) | 0.92 (0.11) | 0.92 (0.12) | 0.365 | −0.04 | 0.229 |
| 81 | Selenomonas sp._oral_taxon_137 | U | – | 0.95 (0.11) | 0.95 (0.25) | 1.21 (0.17) | 0.61 (0.20) | 0.064 | −0.04 | 0.145 |
| 82 | Corynebacterium durum | U | – | 0.93 (0.08) | 1.53 (0.19) | 1.07 (0.12) | 0.42 (0.13) | <.001* | −0.15 | <.001* |
| 83 | Lautropia mirabilis | U | – | 0.88 (0.09) | 1.28 (0.21) | 0.99 (0.13) | 0.53 (0.15) | 0.006 | −0.10 | <.001 |
| 84 | Veillonella rogosae | N | – | 0.87 (0.09) | 1.06 (0.20) | 1.08 (0.13) | 0.49 (0.16) | 0.010 | −0.10 | <.001 |
| 85 | Leptotrichia sp._oral_taxon_417 | N | – | 0.86 (0.09) | 0.41 (0.20) | 0.95 (0.13) | 1.01 (0.16) | 0.048 | 0.10 | 0.006 |
| 86 | Selenomonas flueggei | N | – | 0.81 (0.08) | 0.58 (0.18) | 0.81 (0.12) | 0.93 (0.14) | 0.317 | 0.04 | 0.122 |
| 87 | Selenomonas sp._oral_taxon_134 | P | – | 0.77 (0.10) | 0.55 (0.21) | 0.75 (0.14) | 0.94 (0.18) | 0.367 | 0.03 | 0.251 |
| 88 | Streptococcus parasanguinis_II | U | – | 0.74 (0.09) | 0.58 (0.19) | 0.49 (0.13) | 1.15 (0.15) | 0.003 | 0.11 | <.001* |
| 89 | Megasphaera micronuciformis | N | – | 0.70 (0.08) | 0.47 (0.19) | 0.46 (0.13) | 1.14 (0.14) | <.001 | 0.12 | <.001* |
| 90 | Capnocytophaga sp._oral_taxon_336 | N | – | 0.69 (0.09) | 0.68 (0.19) | 0.69 (0.13) | 0.71 (0.16) | 0.991 | 0.02 | 0.480 |
| 91 | Oribacterium sp._oral_taxon_078 | U | – | 0.66 (0.08) | −0.03 (0.17) | 0.51 (0.11) | 1.26 (0.14) | <.001* | 0.18 | <.001* |
| 92 | Actinomyces sp._oral_taxon_171 | P | – | 0.66 (0.08) | 0.82 (0.18) | 0.66 (0.12) | 0.57 (0.13) | 0.527 | −0.10 | 0.090 |
| 93 | Lachnospiraceae_[G-3] sp._oral_taxon_100 | U | – | 0.59 (0.08) | 0.60 (0.18) | 0.73 (0.12) | 0.41 (0.14) | 0.200 | −0.03 | 0.239 |
| 94 | Parvimonas sp._oral_taxon_393 | U | – | 0.58 (0.11) | 1.11 (0.24) | 0.63 (0.16) | 0.22 (0.17) | 0.010 | −0.12 | <.001* |
| 95 | Actinomyces gerencseriae | N | B | 0.56 (0.07) | 0.49 (0.17) | 0.37 (0.11) | 0.86 (0.13) | 0.012 | 0.10 | 0.008 |
| 96 | Dialister pneumosintes | P | – | 0.55 (0.09) | 0.64 (0.20) | 0.42 (0.14) | 0.65 (0.16) | 0.477 | 0.03 | 0.357 |
| 97 | Kingella denitrificans | N | – | 0.54 (0.09) | 0.21 (0.20) | 0.45 (0.13) | 0.84 (0.15) | 0.025 | 0.10 | 0.024 |
| 98 | Porphyromonas endodontalis | N | – | 0.52 (0.12) | 1.09 (0.27) | 0.56 (0.17) | 0.13 (0.20) | 0.015 | −0.10 | <.001 |
| 99 | TM7_[G-5] sp._oral_taxon_356 | P | – | 0.49 (0.11) | 0.30 (0.23) | 0.61 (0.16) | 0.43 (0.19) | 0.517 | 0.02 | 0.580 |
| 100 | Selenomonas sp._oral_taxon_919 | U | – | 0.47 (0.08) | 0.72 (0.18) | 0.45 (0.12) | 0.35 (0.15) | 0.287 | −0.10 | 0.096 |
| 101 | Leptotrichia buccalis | N | – | 0.45 (0.10) | 0.23 (0.23) | 0.77 (0.14) | 0.16 (0.16) | 0.011 | −0.03 | 0.375 |
| 102 | Prevotella sp._oral_taxon_472 | N | – | 0.45 (0.10) | 0.65 (0.23) | 0.80 (0.15) | −0.13 (0.17) | <.001* | −0.10 | <.001 |
| 103 | Capnocytophaga sp._oral_taxon_326 | P | – | 0.41 (0.10) | 0.38 (0.23) | 0.62 (0.15) | 0.15 (0.17) | 0.121 | −0.10 | 0.080 |
| 104 | Streptococcus constellatus | N | O | 0.35 (0.10) | 0.25 (0.21) | 0.18 (0.15) | 0.63 (0.17) | 0.114 | 0.04 | 0.139 |
| 105 | Prevotella salivae | N | – | 0.34 (0.08) | −0.22 (0.18) | 0.32 (0.12) | 0.69 (0.14) | <.001 | 0.15 | <.001* |
| 106 | Leptotrichia sp._oral_taxon_392 | U | – | 0.33 (0.09) | 0.49 (0.20) | 0.58 (0.13) | − 0.08 (0.15) | 0.003 | −0.10 | 0.001 |
| 107 | Actinobaculum sp._oral_taxon_183 | N | – | 0.32 (0.08) | 0.29 (0.17) | 0.28 (0.12) | 0.40 (0.14) | 0.765 | 0.01 | 0.742 |
| 108 | Neisseria oralis | U | – | 0.31 (0.11) | 0.47 (0.25) | 0.35 (0.15) | 0.19 (0.18) | 0.618 | −0.04 | 0.133 |
| 109 | Atopobium rimae | N | – | 0.21 (0.09) | −0.08 (0.19) | 0.17 (0.13) | 0.43 (0.16) | 0.124 | 0.10 | 0.108 |
| 110 | Leptotrichia hofstadii | N | – | 0.20 (0.10) | 0.10 (0.22) | 0.27 (0.15) | 0.17 (0.17) | 0.804 | 0.01 | 0.743 |
| 111 | Streptococcus sp._oral_taxon_074 | N | – | 0.15 (0.07) | 0.15 (0.16) | 0.25 (0.11) | 0.02 (0.12) | 0.340 | −0.04 | 0.154 |
| 112 | Fretibacterium sp._oral_taxon_359 | L | – | 0.15 (0.11) | 0.14 (0.25) | 0.04 (0.16) | 0.30 (0.18) | 0.537 | 0.02 | 0.552 |
| 113 | Leptotrichia shahii | U | – | 0.11 (0.10) | 0.30 (0.22) | −0.09 (0.15) | 0.26 (0.19) | 0.209 | 0.03 | 0.298 |
| 114 | Tannerella sp._oral_taxon_286 | U | – | 0.11 (0.07) | − 0.15 (0.16) | 0.26 (0.10) | 0.06 (0.13) | 0.101 | 0.03 | 0.370 |
| 115 | Porphyromonas sp._oral_taxon_284 | N | – | 0.08 (0.10) | 0.14 (0.21) | 0.22 (0.14) | − 0.14 (0.16) | 0.223 | −0.10 | 0.080 |
| 116 | Peptostreptococcaceae_[XI][G-7] [Eubacterium]_yuri | P | – | 0.05 (0.10) | 0.50 (0.21) | 0.19 (0.14) | −0.40 (0.16) | 0.001 | −0.14 | <.001* |
| 117 | Selenomonas sp._oral_taxon_146 | L | – | 0.04 (0.08) | 0.04 (0.18) | − 0.03 (0.12) | 0.14 (0.14) | 0.659 | 0.014 | 0.633 |
| 118 | Fusobacterium periodonticum | N | O | −0.02 (0.07) | −0.12 (0.16) | 0.13 (0.11) | −0.17 (0.13) | 0.174 | −0.02 | 0.488 |
| 119 | Actinomyces meyeri | L | B | −0.04 (0.08) | 0.29 (0.18) | 0.05 (0.12) | − 0.35 (0.13) | 0.010 | −0.11 | <.001* |
| 120 | Leptotrichia sp._oral_taxon_215 | N | – | − 0.05 (0.08) | 0.16 (0.18) | 0.01 (0.12) | − 0.24 (0.14) | 0.157 | −0.04 | 0.170 |
| 121 | Prevotella oralis | N | – | − 0.06 (0.10) | −0.34 (0.20) | − 0.13 (0.14) | 0.20 (0.17) | 0.105 | 0.10 | 0.030 |
| 122 | Prevotella pleuritidis | N | – | − 0.10 (0.12) | −0.07 (0.27) | 0.09 (0.18) | −0.38 (0.20) | 0.211 | −0.04 | 0.190 |
| 123 | Abiotrophia defectiva | N | – | −0.15 (0.09) | −0.05 (0.19) | − 0.01 (0.13) | − 0.38 (0.14) | 0.138 | − 0.10 | 0.028 |
| 124 | Gemella sanguinis | N | – | −0.19 (0.07) | −0.16 (0.15) | − 0.35 (0.10) | − 0.00 (0.12) | 0.077 | 0.04 | 0.204 |
| 125 | Fusobacterium nucleatum_subsp._nucleatum | N | O | −0.25 (0.08) | −0.44 (0.17) | − 0.30 (0.11) | − 0.08 (0.14) | 0.209 | 0.03 | 0.259 |
| 126 | Atopobium parvulum | N | – | − 0.25 (0.08) | −0.28 (0.17) | − 0.47 (0.11) | 0.06 (0.14) | 0.009 | 0.10 | 0.005 |
| 127 | Aggregatibacter sp._oral_taxon_458 | N | – | − 0.25 (0.09) | − 0.11 (0.19) | − 0.17 (0.13) | − 0.44 (0.15) | 0.309 | −0.10 | 0.047 |
| 128 | Streptococcus parasanguinis_I | N | – | − 0.26 (0.08) | −0.29 (0.17) | − 0.48 (0.11) | 0.05 (0.13) | 0.008 | 0.10 | 0.008 |
| 129 | Aggregatibacter aphrophilus | N | – | − 0.27 (0.11) | −0.18 (0.25) | − 0.01 (0.17) | − 0.66 (0.18) | 0.027 | − 0.10 | 0.015 |
| 130 | Treponema denticola | N | R | −0.28 (0.10) | −0.16 (0.22) | − 0.25 (0.15) | − 0.39 (0.18) | 0.692 | − 0.04 | 0.211 |
| 131 | Prevotella saccharolytica | U | – | − 0.37 (0.07) | − 0.38 (0.16) | − 0.26 (0.11) | − 0.51 (0.13) | 0.336 | − 0.01 | 0.663 |
| 132 | TM7_[G-1] sp._oral_taxon_488 | P | – | − 0.39 (0.10) | − 0.39 (0.22) | − 0.11 (0.15) | − 0.76 (0.16) | 0.015 | −0.04 | 0.132 |
| 133 | Johnsonella ignava | U | – | − 0.41 (0.09) | −0.50 (0.21) | − 0.34 (0.14) | − 0.45 (0.16) | 0.783 | − 0.01 | 0.783 |
| 134 | Actinomyces israelii | N | B | −0.47 (0.06) | −0.65 (0.13) | − 0.52 (0.09) | − 0.30 (0.11) | 0.091 | 0.10 | 0.012 |
| 135 | Lachnoanaerobaculum umeaense | P | – | − 0.47 (0.07) | −0.35 (0.17) | − 0.39 (0.11) | − 0.65 (0.12) | 0.198 | −0.03 | 0.316 |
| 136 | Streptococcus sp._oral_taxon_056 | U | – | − 0.49 (0.08) | −0.38 (0.19) | − 0.37 (0.12) | − 0.73 (0.14) | 0.127 | −0.04 | 0.050 |
| 137 | Olsenella sp._oral_taxon_807 | N | – | − 0.49 (0.07) | −0.93 (0.15) | − 0.50 (0.10) | − 0.25 (0.12) | 0.002 | 0.11 | <.001* |
| 138 | Solobacterium moorei | U | – | − 0.51 (0.06) | −0.49 (0.15) | − 0.60 (0.09) | − 0.42 (0.11) | 0.437 | 0.04 | 0.221 |
| 139 | Treponema maltophilum | P | – | − 0.53 (0.08) | −0.78 (0.16) | − 0.59 (0.11) | − 0.32 (0.13) | 0.070 | 0.10 | 0.040 |
| 140 | TM7_[G-1] sp._oral_taxon_348 | N | – | − 0.53 (0.08) | − 0.66 (0.17) | − 0.29 (0.13) | − 0.77 (0.14) | 0.026 | − 0.03 | 0.373 |
| 141 | Porphyromonas gingivalis | N | R | −0.56 (0.12) | −0.70 (0.26) | − 0.60 (0.17) | − 0.43 (0.22) | 0.688 | 0.03 | 0.348 |
| 142 | Centipeda periodontii | N | – | − 0.60 (0.08) | − 0.94 (0.15) | − 0.55 (0.11) | − 0.47 (0.13) | 0.074 | 0.06 | 0.031 |
| 143 | Selenomonas sp._oral_taxon_126 | N | – | − 0.60 (0.08) | −0.77 (0.18) | − 0.56 (0.12) | − 0.56 (0.14) | 0.588 | 0.03 | 0.386 |
| 144 | Desulfobulbus sp._oral_taxon_041 | U | – | −0.66 (0.10) | −1.02 (0.20) | − 0.70 (0.14) | − 0.40 (0.17) | 0.064 | 0.10 | 0.027 |
| 145 | Alloprevotella rava | U | – | −0.68 (0.08) | −0.78 (0.18) | − 0.64 (0.12) | − 0.69 (0.14) | 0.809 | 0.02 | 0.464 |
| 146 | Actinobaculum sp._oral_taxon_848 | P | – | − 0.70 (0.08) | −0.83 (0.17) | − 0.82 (0.11) | −0.46 (0.13) | 0.080 | 0.10 | 0.016 |
| 147 | Stomatobaculum longum | N | – | − 0.70 (0.07) | − 0.95 (0.16) | − 0.76 (0.11) | −0.48 (0.13) | 0.054 | 0.11 | <.001 |
| 148 | Prevotella histicola | N | – | − 0.75 (0.09) | − 0.96 (0.18) | −1.04 (0.13) | − 0.26 (0.16) | <.001 | 0.11 | <.001* |
| 149 | Aggregatibacter segnis | U | – | − 0.79 (0.10) | − 0.42 (0.22) | − 0.69 (0.14) | −1.13 (0.15) | 0.020 | − 0.11 | <.001* |
| 150 | Leptotrichia sp._oral_taxon_225 | N | – | − 0.80 (0.10) | − 0.43 (0.22) | − 0.60 (0.15) | − 1.25 (0.15) | 0.002 | − 0.11 | <.001* |
| 151 | Ruminococcaceae_[G-1] sp._oral_taxon_075 | N | – | − 0.80 (0.08) | − 0.79 (0.17) | − 0.69 (0.12) | −0.94 (0.13) | 0.350 | −0.03 | 0.341 |
| 152 | Peptostreptococcus stomatis | U | – | − 0.80 (0.09) | −0.50 (0.19) | − 0.77 (0.13) | − 1.02 (0.14) | 0.085 | − 0.10 | 0.032 |
| 153 | Porphyromonas catoniae | P | – | − 0.92 (0.09) | − 0.50 (0.20) | − 0.79 (0.13) | −1.31 (0.14) | 0.002 | − 0.10 | <.001 |
| 154 | Actinomyces sp._oral_taxon_178 | P | – | −0.93 (0.06) | − 1.15 (0.14) | − 0.94 (0.09) | − 0.78 (0.10) | 0.099 | 0.05 | 0.080 |
| 155 | Prevotella pallens | N | – | − 0.93 (0.08) | −1.00 (0.17) | − 1.05 (0.11) | −0.73 (0.14) | 0.191 | 0.10 | 0.054 |
| 156 | Filifactor alocis | U | – | − 0.94 (0.10) | −0.66 (0.23) | − 0.98 (0.15) | − 1.05 (0.18) | 0.382 | − 0.10 | 0.077 |
| 157 | Selenomonas sp._oral_taxon_936 | P | – | −0.96 (0.08) | − 0.91 (0.17) | −1.05 (0.12) | − 0.87 (0.14) | 0.578 | 0.03 | 0.323 |
| 158 | TM7_[G-1] sp._oral_taxon_347 | N | – | − 0.97 (0.09) | −0.64 (0.20) | − 0.95 (0.14) | −1.17 (0.14) | 0.107 | − 0.10 | 0.071 |
| 159 | Haemophilus sp._oral_taxon_036 | N | – | −1.01 (0.09) | − 0.65 (0.19) | − 1.00 (0.13) | − 1.21 (0.15) | 0.075 | − 0.10 | 0.002 |
| 160 | Prevotella sp._oral_taxon_292 | P | – | − 1.06 (0.08) | − 1.34 (0.17) | − 1.15 (0.12) | −0.79 (0.15) | 0.040 | 0.10 | 0.001 |
| 161 | Leptotrichia sp._oral_taxon_498 | N | – | − 1.07 (0.09) | −1.28 (0.20) | − 1.20 (0.13) | −0.77 (0.16) | 0.059 | 0.10 | 0.013 |
| 162 | Capnocytophaga sp._oral_taxon_338 | U | – | − 1.08 (0.09) | −1.17 (0.20) | − 1.12 (0.13) | −0.98 (0.15) | 0.671 | 0.01 | 0.808 |
| 163 | Alloprevotella sp._oral_taxon_308 | N | – | − 1.14 (0.07) | −0.90 (0.14) | −1.28 (0.10) | − 1.10 (0.12) | 0.111 | −0.01 | 0.799 |
| 164 | Treponema sp._oral_taxon_231 | P | – | − 1.15 (0.09) | −1.04 (0.18) | − 1.03 (0.13) | − 1.36 (0.15) | 0.206 | − 0.10 | 0.074 |
| 165 | TM7_[G-1] sp._oral_taxon_352 | N | – | − 1.15 (0.07) | − 1.31 (0.15) | − 1.11 (0.10) | − 1.11 (0.12) | 0.545 | 0.04 | 0.173 |
| 166 | Prevotella buccae | U | – | − 1.23 (0.07) | −1.71 (0.14) | − 1.36 (0.11) | − 0.78 (0.12) | <.001* | 0.14 | <.001* |
| 167 | Prevotella loescheii | N | – | −1.24 (0.09) | −0.96 (0.21) | −0.97 (0.14) | − 1.74 (0.15) | <.001 | − 0.10 | 0.001 |
| 168 | Capnocytophaga sp._oral_taxon_864 | U | – | − 1.27 (0.08) | −0.98 (0.20) | −1.15 (0.13) | − 1.57 (0.13) | 0.020 | − 0.10 | 0.005 |
| 169 | Actinomyces sp._oral_taxon_170 | U | – | −1.29 (0.08) | − 0.99 (0.19) | − 1.16 (0.13) | − 1.62 (0.13) | 0.011 | − 0.10 | <.001 |
| 170 | Lachnoanaerobaculum orale | U | – | − 1.31 (0.07) | − 1.09 (0.16) | − 1.46 (0.09) | −1.23 (0.12) | 0.085 | 0.02 | 0.513 |
| 171 | Ottowia sp._oral_taxon_894 | N | – | − 1.31 (0.08) | −1.44 (0.18) | − 1.24 (0.12) | − 1.33 (0.14) | 0.662 | −0.00 | 0.938 |
| 172 | Streptococcus lactarius | N | – | − 1.32 (0.07) | − 1.06 (0.15) | − 1.46 (0.10) | − 1.30 (0.12) | 0.097 | −0.02 | 0.414 |
| 173 | Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infi | P | – | − 1.33 (0.07) | − 1.59 (0.15) | − 1.41 (0.09) | − 1.08 (0.12) | 0.014 | 0.10 | 0.002 |
| 174 | Leptotrichia sp._oral_taxon_219 | N | – | − 1.34 (0.07) | −1.39 (0.17) | − 1.27 (0.11) | −1.39 (0.12) | 0.736 | −0.01 | 0.717 |
| 175 | Prevotella intermedia | P | O | −1.36 (0.11) | −1.31 (0.25) | − 1.35 (0.17) | − 1.41 (0.18) | 0.943 | −0.04 | 0.181 |
| 176 | Veillonella denticariosi | U | – | − 1.37 (0.09) | − 1.51 (0.19) | − 1.39 (0.13) | − 1.27 (0.15) | 0.621 | 0.04 | 0.156 |
| 177 | Fretibacterium sp._oral_taxon_362 | N | – | − 1.43 (0.08) | −1.48 (0.19) | − 1.43 (0.12) | − 1.42 (0.14) | 0.965 | 0.00 | 0.888 |
| 178 | Bacteroidetes_[G-5] sp._oral_taxon_511 | U | – | − 1.47 (0.09) | − 1.44 (0.19) | − 1.43 (0.14) | − 1.54 (0.15) | 0.846 | −0.03 | 0.378 |
| 179 | Prevotella sp._oral_taxon_313 | P | – | − 1.49 (0.08) | −1.14 (0.18) | − 1.75 (0.11) | − 1.35 (0.14) | 0.007 | 0.02 | 0.431 |
| 180 | TM7_[G-3] sp._oral_taxon_351 | P | – | − 1.50 (0.06) | −1.84 (0.13) | − 1.39 (0.10) | − 1.45 (0.11) | 0.029 | 0.10 | 0.018 |
| 181 | Streptococcus australis | N | – | − 1.51 (0.07) | −1.62 (0.15) | − 1.57 (0.11) | − 1.38 (0.13) | 0.373 | 0.03 | 0.295 |
| 182 | Granulicatella elegans | N | – | − 1.59 (0.07) | −1.18 (0.17) | − 1.72 (0.11) | −1.65 (0.12) | 0.023 | −0.10 | 0.067 |
| 183 | TM7_[G-1] sp._oral_taxon_869 | P | – | − 1.60 (0.09) | −1.64 (0.20) | − 1.55 (0.14) | − 1.64 (0.15) | 0.890 | 0.01 | 0.663 |
| 184 | Capnocytophaga sp._oral_taxon_902 | N | – | −1.65 (0.08) | − 1.56 (0.19) | − 1.68 (0.12) | −1.67 (0.14) | 0.860 | −0.04 | 0.220 |
| 185 | Prevotella dentalis | P | – | −1.66 (0.08) | −1.65 (0.19) | − 1.82 (0.12) | −1.47 (0.14) | 0.180 | 0.03 | 0.326 |
| 186 | Campylobacter curvus | N | – | − 1.67 (0.07) | −1.57 (0.17) | − 1.79 (0.10) | − 1.58 (0.13) | 0.365 | 0.03 | 0.335 |
| 187 | Pseudoramibacter alactolyticus | P | – | − 1.68 (0.08) | − 2.18 (0.17) | −1.73 (0.12) | − 1.35 (0.15) | 0.001 | 0.12 | <.001* |
| 188 | TM7_[G-6] sp._oral_taxon_870 | N | – | − 1.71 (0.08) | −1.47 (0.18) | − 1.69 (0.12) | − 1.85 (0.13) | 0.220 | −0.10 | 0.085 |
| 189 | Veillonellaceae_[G-1] sp._oral_taxon_129 | N | – | − 1.71 (0.08) | − 1.96 (0.16) | − 1.80 (0.11) | − 1.46 (0.14) | 0.042 | 0.10 | 0.010 |
| 190 | Tannerella sp._oral_taxon_808 | U | – | − 1.75 (0.07) | −2.03 (0.14) | −1.70 (0.10) | − 1.65 (0.12) | 0.104 | 0.10 | 0.011 |
| 191 | Peptostreptococcaceae_[XI][G-6] [Eubacterium]_noda | L | – | − 1.75 (0.08) | − 1.67 (0.18) | − 1.90 (0.11) | −1.61 (0.14) | 0.238 | 0.02 | 0.425 |
| 192 | Mitsuokella sp._oral_taxon_131 | N | – | − 1.79 (0.09) | −2.18 (0.17) | − 1.96 (0.13) | − 1.36 (0.16) | <.001 | 0.14 | <.001* |
| 193 | Mycoplasma salivarium | P | – | − 1.80 (0.07) | −1.77 (0.15) | − 1.87 (0.11) | − 1.71 (0.12) | 0.579 | 0.03 | 0.302 |
| 194 | Haemophilus haemolyticus | P | – | − 1.81 (0.08) | −1.30 (0.19) | − 1.92 (0.12) | − 1.94 (0.12) | 0.006 | −0.10 | 0.043 |
| 195 | Bergeyella sp._oral_taxon_907 | P | – | −1.81 (0.07) | −1.86 (0.15) | − 1.72 (0.10) | − 1.92 (0.12) | 0.405 | − 0.01 | 0.765 |
| 196 | TM7_[G-2] sp._oral_taxon_350 | N | – | − 1.82 (0.09) | − 1.86 (0.18) | − 1.82 (0.13) | − 1.80 (0.15) | 0.968 | 0.02 | 0.412 |
| 197 | Prevotella veroralis | U | – | − 1.82 (0.08) | −1.73 (0.18) | − 1.78 (0.13) | − 1.93 (0.13) | 0.582 | −0.02 | 0.413 |
| 198 | Aggregatibacter paraphrophilus | N | – | − 1.82 (0.09) | −1.48 (0.21) | − 1.69 (0.14) | −2.19 (0.13) | 0.007 | −0.10 | <.001 |
| 199 | Leptotrichia sp._oral_taxon_223 | P | – | − 1.82 (0.08) | −1.71 (0.17) | − 1.98 (0.11) | − 1.69 (0.14) | 0.206 | 0.02 | 0.499 |
| 200 | Bifidobacterium dentium | N | – | − 1.85 (0.08) | −2.10 (0.18) | −2.12 (0.12) | −1.37 (0.15) | <.001* | 0.15 | <.001* |
| 201 | Alloprevotella sp._oral_taxon_473 | U | – | − 1.87 (0.08) | −1.63 (0.17) | − 1.88 (0.12) | − 1.98 (0.13) | 0.300 | −0.10 | 0.030 |
| 202 | Veillonellaceae_[G-1] sp._oral_taxon_145 | U | – | − 1.88 (0.08) | −1.98 (0.16) | − 1.83 (0.12) | − 1.88 (0.14) | 0.768 | 0.02 | 0.551 |
| 203 | Neisseria bacilliformis | N | – | −1.89 (0.09) | −1.82 (0.20) | − 1.90 (0.13) | − 1.93 (0.14) | 0.906 | −0.04 | 0.194 |
| 204 | Capnocytophaga sp._oral_taxon_412 | N | – | − 1.89 (0.08) | −1.74 (0.18) | − 1.81 (0.12) | −2.09 (0.13) | 0.173 | − 0.04 | 0.162 |
| 205 | Neisseria subflava | N | – | − 1.89 (0.09) | − 1.84 (0.18) | −2.04 (0.13) | − 1.73 (0.16) | 0.267 | 0.10 | 0.118 |
| 206 | Veillonella sp._oral_taxon_780 | N | – | − 1.94 (0.08) | − 1.46 (0.20) | − 1.93 (0.12) | − 2.20 (0.12) | 0.004 | −0.10 | <.001 |
| 207 | Lachnospiraceae_[G-8] sp._oral_taxon_500 | N | – | − 1.94 (0.07) | −1.91 (0.16) | −2.03 (0.10) | − 1.83 (0.12) | 0.443 | 0.01 | 0.695 |
| 208 | Capnocytophaga sp._oral_taxon_323 | P | – | −1.94 (0.08) | −1.99 (0.17) | − 1.93 (0.12) | − 1.94 (0.14) | 0.966 | − 0.01 | 0.731 |
| 209 | Scardovia wiggsiae | P | – | −1.94 (0.09) | − 2.07 (0.19) | − 2.11 (0.12) | − 1.66 (0.16) | 0.061 | 0.10 | 0.009 |
| 210 | Sphingomonas echinoides | N | – | − 1.95 (0.06) | −1.75 (0.14) | − 1.89 (0.10) | − 2.15 (0.11) | 0.056 | −0.10 | <.001 |
| 211 | SR1_[G-1] sp._oral_taxon_874 | U | – | − 1.99 (0.07) | −1.76 (0.15) | − 1.88 (0.10) | −2.26 (0.11) | 0.008 | −0.10 | 0.006 |
| 212 | Treponema lecithinolyticum | U | – | −2.01 (0.08) | −1.98 (0.17) | − 1.90 (0.12) | − 2.18 (0.13) | 0.302 | −0.10 | 0.068 |
| 213 | Prevotella baroniae | P | – | −2.04 (0.07) | −2.20 (0.15) | − 2.03 (0.11) | − 1.96 (0.13) | 0.490 | 0.04 | 0.209 |
| 214 | Pseudomonas fluorescens | P | – | − 2.05 (0.07) | − 2.12 (0.15) | − 2.07 (0.11) | −1.98 (0.13) | 0.767 | 0.03 | 0.334 |
| 215 | Shuttleworthia satelles | P | – | − 2.08 (0.07) | − 2.27 (0.14) | − 2.21 (0.10) | −1.82 (0.12) | 0.016 | 0.10 | <.001 |
| 216 | Prevotella sp._oral_taxon_306 | U | −2.08 (0.07) | −2.32 (0.14) | − 2.21 (0.10) | −1.79 (0.13) | 0.010 | 0.10 | <.001 | |
| 217 | Porphyromonas sp._oral_taxon_275 | N | – | − 2.11 (0.07) | −2.09 (0.16) | − 2.01 (0.12) | − 2.26 (0.12) | 0.321 | −0.04 | 0.184 |
| 218 | Streptococcus sinensis | P | – | − 2.14 (0.06) | − 1.95 (0.13) | − 2.30 (0.08) | − 2.05 (0.11) | 0.050 | 0.02 | 0.517 |
| 219 | Anaerolineae_[G-1] sp._oral_taxon_439 | N | – | − 2.14 (0.08) | − 2.47 (0.15) | − 2.22 (0.11) | −1.85 (0.14) | 0.008 | 0.12 | <.001* |
| 220 | Bacteroidaceae_[G-1] sp._oral_taxon_272 | N | – | − 2.15 (0.07) | − 2.48 (0.15) | − 2.21 (0.10) | −1.87 (0.13) | 0.007 | 0.10 | <.001 |
| 221 | Prevotella micans | N | – | − 2.15 (0.07) | −2.24 (0.14) | − 2.18 (0.10) | − 2.08 (0.12) | 0.658 | 0.02 | 0.452 |
| 222 | Leptotrichia goodfellowii | U | – | − 2.17 (0.07) | −1.90 (0.17) | −2.14 (0.11) | − 2.36 (0.12) | 0.080 | −0.10 | 0.008 |
| 223 | Capnocytophaga sp._oral_taxon_903 | N | – | − 2.17 (0.08) | −2.15 (0.17) | − 2.12 (0.11) | − 2.25 (0.13) | 0.751 | − 0.01 | 0.731 |
| 224 | Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saph | U | – | − 2.18 (0.08) | −2.46 (0.15) | − 2.13 (0.12) | − 2.08 (0.13) | 0.195 | 0.04 | 0.229 |
| 225 | Treponema sp._oral_taxon_237 | P | – | − 2.20 (0.08) | −1.68 (0.19) | −2.21 (0.12) | − 2.46 (0.13) | 0.003 | −0.11 | <.001* |
| 226 | Fusobacterium sp._oral_taxon_370 | U | – | − 2.20 (0.06) | −2.25 (0.12) | − 2.08 (0.09) | − 2.32 (0.10) | 0.176 | −0.04 | 0.176 |
| 227 | Atopobium sp._oral_taxon_199 | U | – | − 2.26 (0.07) | −2.19 (0.16) | − 2.18 (0.11) | − 2.40 (0.12) | 0.334 | −0.02 | 0.433 |
| 228 | Prevotella sp._oral_taxon_314 | N | – | − 2.28 (0.07) | − 2.29 (0.16) | − 2.35 (0.11) | − 2.18 (0.13) | 0.605 | 0.02 | 0.519 |
| 229 | Capnocytophaga sp._oral_taxon_324 | U | – | − 2.28 (0.07) | −2.43 (0.15) | − 2.24 (0.11) | − 2.25 (0.12) | 0.588 | 0.03 | 0.256 |
| 230 | Haemophilus parahaemolyticus | N | – | − 2.29 (0.08) | −1.86 (0.18) | −2.23 (0.12) | − 2.61 (0.11) | 0.002 | −0.11 | <.001* |
| 231 | Porphyromonas sp._oral_taxon_278 | U | – | − 2.29 (0.07) | −2.40 (0.14) | − 2.24 (0.11) | − 2.30 (0.12) | 0.716 | 0.00 | 0.977 |
| 232 | Selenomonas sp._oral_taxon_937 | U | – | − 2.35 (0.06) | −2.34 (0.12) | − 2.46 (0.09) | − 2.22 (0.11) | 0.203 | 0.03 | 0.386 |
| 233 | Selenomonas dianae | N | – | − 2.36 (0.07) | − 2.52 (0.14) | − 2.27 (0.10) | − 2.38 (0.11) | 0.367 | 0.02 | 0.569 |
| 234 | Selenomonas sp._oral_taxon_133 | U | – | − 2.37 (0.08) | − 2.25 (0.18) | − 2.40 (0.11) | − 2.41 (0.13) | 0.719 | −0.02 | 0.396 |
| 235 | Selenomonas sp._oral_taxon_478 | P | – | − 2.49 (0.06) | −2.54 (0.13) | − 2.46 (0.09) | − 2.49 (0.10) | 0.882 | 0.03 | 0.306 |
| 236 | Capnocytophaga sp._oral_taxon_332 | U | – | − 2.50 (0.07) | −2.26 (0.16) | − 2.42 (0.11) | − 2.72 (0.11) | 0.043 | −0.10 | 0.043 |
| 237 | Megasphaera sp._oral_taxon_123 | N | – | − 2.51 (0.08) | − 2.06 (0.19) | − 2.51 (0.12) | − 2.77 (0.13) | 0.009 | − 0.10 | 0.002 |
| 238 | Bradyrhizobium elkanii | U | – | − 2.54 (0.08) | −2.37 (0.17) | − 2.68 (0.11) | − 2.44 (0.13) | 0.209 | −0.00 | 0.900 |
| 239 | Prevotella sp._oral_taxon_376 | P | – | − 2.54 (0.07) | −2.22 (0.17) | − 2.49 (0.11) | − 2.79 (0.12) | 0.015 | −0.10 | <.001 |
| 240 | Prevotella sp._oral_taxon_526 | P | – | − 2.56 (0.07) | −2.59 (0.14) | − 2.57 (0.10) | − 2.52 (0.12) | 0.923 | 0.01 | 0.736 |
| 241 | Selenomonas sp._oral_taxon_442 | U | – | − 2.58 (0.05) | − 2.78 (0.11) | − 2.52 (0.09) | − 2.53 (0.09) | 0.177 | 0.10 | 0.065 |
| 242 | Leptotrichia sp._oral_taxon_879 | U | – | − 2.60 (0.07) | − 2.56 (0.16) | − 2.62 (0.10) | −2.59 (0.11) | 0.951 | − 0.02 | 0.597 |
| 243 | Selenomonas sp._oral_taxon_149 | P | – | − 2.61 (0.06) | − 2.75 (0.12) | − 2.70 (0.09) | − 2.42 (0.10) | 0.048 | 0.10 | 0.004 |
| 244 | Aggregatibacter sp._oral_taxon_513 | U | – | − 2.66 (0.07) | − 2.64 (0.14) | − 2.52 (0.11) | − 2.85 (0.11) | 0.107 | − 0.03 | 0.368 |
| 245 | Treponema vincentii | N | – | − 2.67 (0.06) | −2.55 (0.13) | − 2.60 (0.09) | − 2.83 (0.09) | 0.140 | −0.04 | 0.125 |
| 246 | Capnocytophaga sp._oral_taxon_380 | N | – | − 2.70 (0.07) | −2.65 (0.14) | − 2.59 (0.11) | − 2.88 (0.11) | 0.132 | −0.10 | 0.107 |
| 247 | Johnsonella sp._oral_taxon_166 | U | – | − 2.78 (0.06) | −2.96 (0.12) | − 2.69 (0.10) | − 2.80 (0.11) | 0.292 | −0.01 | 0.855 |
| 248 | Treponema medium | P | – | −2.79 (0.06) | − 2.85 (0.14) | − 2.74 (0.10) | −2.81 (0.10) | 0.777 | 0.02 | 0.579 |
| 249 | Fretibacterium sp._oral_taxon_358 | U | – | − 2.84 (0.07) | −2.87 (0.14) | − 2.88 (0.10) | − 2.77 (0.12) | 0.708 | 0.02 | 0.494 |
| 250 | Neisseria pharyngis | N | – | − 2.87 (0.06) | −2.81 (0.13) | − 2.95 (0.09) | − 2.80 (0.11) | 0.479 | 0.01 | 0.760 |
| 251 | Prevotella sp._oral_taxon_475 | N | – | − 2.87 (0.06) | −2.81 (0.12) | − 2.84 (0.09) | − 2.95 (0.09) | 0.575 | −0.04 | 0.157 |
| 252 | Microbacterium flavescens | P | – | − 2.89 (0.04) | − 2.73 (0.09) | − 2.89 (0.06) | −2.97 (0.07) | 0.151 | −0.10 | 0.051 |
| 253 | Mitsuokella sp._oral_taxon_521 | N | – | − 2.90 (0.06) | −2.91 (0.12) | − 2.92 (0.08) | − 2.87 (0.11) | 0.929 | 0.02 | 0.603 |
| 254 | Lactobacillus gasseri | N | – | − 2.95 (0.06) | −3.08 (0.12) | − 3.09 (0.09) | −2.70 (0.12) | 0.012 | 0.10 | 0.002 |
| 255 | Butyrivibrio sp._oral_taxon_080 | P | – | − 2.96 (0.06) | −2.85 (0.13) | − 2.90 (0.09) | −3.10 (0.09) | 0.193 | −0.10 | 0.038 |
| 256 | Fretibacterium sp._oral_taxon_361 | P | – | − 2.98 (0.06) | − 3.18 (0.10) | − 2.97 (0.09) | − 2.88 (0.11) | 0.207 | 0.02 | 0.469 |
| 257 | Aggregatibacter actinomycetemcomitans | P | – | − 3.01 (0.07) | −2.97 (0.15) | −3.09 (0.10) | −2.94 (0.11) | 0.575 | 0.03 | 0.349 |
| 258 | Streptococcus sobrinus | U | – | − 3.04 (0.06) | −3.21 (0.10) | − 3.19 (0.09) | −2.75 (0.14) | 0.005 | 0.11 | <.001* |
| 259 | GN02_[G-2] sp._oral_taxon_873 | P | – | − 3.06 (0.05) | −3.08 (0.12) | − 3.03 (0.08) | − 3.10 (0.09) | 0.851 | −0.00 | 0.927 |
| 260 | Prevotella multiformis | N | – | − 3.08 (0.06) | − 3.12 (0.11) | − 3.10 (0.09) | − 3.05 (0.10) | 0.901 | 0.03 | 0.359 |
| 261 | Brevundimonas diminuta | N | – | − 3.30 (0.04) | − 3.17 (0.09) | − 3.35 (0.06) | − 3.30 (0.07) | 0.232 | −0.03 | 0.306 |
| 262 | Atopobium sp._oral_taxon_416 | P | – | − 3.38 (0.05) | − 3.45 (0.09) | − 3.44 (0.07) | − 3.27 (0.09) | 0.202 | 0.10 | 0.042 |
| 263 | Treponema sp._oral_taxon_247 | P | – | − 3.45 (0.05) | − 3.35 (0.09) | − 3.50 (0.07) | − 3.44 (0.08) | 0.436 | − 0.02 | 0.566 |
| 264 | Leptothrix sp._oral_taxon_025 | P | – | − 3.50 (0.04) | −3.37 (0.08) | − 3.53 (0.06) | − 3.53 (0.06) | 0.216 | − 0.04 | 0.221 |
| 265 | Pyramidobacter piscolens | P | – | − 3.53 (0.04) | − 3.44 (0.10) | − 3.60 (0.06) | −3.47 (0.07) | 0.251 | − 0.01 | 0.919 |
| 266 | Sphingomonas sp._oral_taxon_006 | P | – | − 3.55 (0.04) | −3.49 (0.08) | − 3.60 (0.05) | − 3.52 (0.06) | 0.407 | − 0.00 | 0.989 |
| 267 | Porphyrobacter tepidarius | N | – | −3.58 (0.03) | −3.51 (0.08) | − 3.65 (0.05) | −3.54 (0.06) | 0.216 | 0.01 | 0.869 |
Rank order, OTUs are sorted high to low, with most abundant OTU at the top of the table
The CLR OTU is interpreted as a log [2] fold-difference for the given species relative to the overall compositional geometric mean. A mean CLR of 3 indicates a 8-fold [23] higher abundance, and a mean CLR of − 3 indicates a 8-fold lower abundance, relative to the overall compositional geometric mean
SE standard error, Pearson r the Pearson product-moment correlation coefficient
p-values: bolded are significant at alpha 0.05; asterisk are significant at alpha 0.05 after Bonferroni correction
Culture status: N = named; U = unnamed; P = phylotyped
Socransky complex32: R = red; O = orange; P = purple; G = green; Y = yellow; B = blue; −-- = not part of the Socransky classification