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. 2019 Nov 13;19:246. doi: 10.1186/s12903-019-0906-2

Table 6.

Prevalence (present, absent) for each of 267 bacterial species identified, overall and by age categories

Rank Ordera OTU Label Age categories (years)
Overall
(N = 1219)
50–59
(N = 239)
60–69
(N = 554)
≥70
(N = 426)
% % % %
1 Streptococcus oralis 100 100 100 100
1 Veillonella dispar 100 100 100 100
1 Veillonella parvula 100 100 100 100
4 Selenomonas sputigena 99.8 99.6 99.8 99.8
5 Fusobacterium nucleatum_subsp._vincentii 99.6 99.6 99.6 99.5
6 Fusobacterium nucleatum_subsp._animalis 99.3 99.6 99.3 99.3
6 Granulicatella adiacens 99.3 99.2 99.5 99.3
8 Streptococcus sanguinis 99.3 100 99.3 99.1
9 Rothia dentocariosa 99.2 99.2 99.3 99.1
10 Campylobacter gracilis 99.1 99.6 98.9 99.1
11 Selenomonas noxia 99.0 98.7 99.1 99.1
11 Streptococcus gordonii 99.0 98.7 98.9 99.3
13 Fusobacterium nucleatum_subsp._polymorphum 98.6 99.2 98.9 97.9
14 Fusobacterium sp._oral_taxon_203 98.4 98.7 98.0 98.8
14 Streptococcus cristatus 98.4 98.7 98.2 98.6
14 Fusobacterium naviforme 98.4 99.2 98.6 97.7
17 Actinomyces naeslundii 98.0 97.9 98.2 97.9
18 Corynebacterium matruchotii 97.5 96.7 97.3 98.1
19 Prevotella oris 97.2 97.5 97.3 96.9
20 Actinomyces oris 97.1 97.5 96.9 97.2
21 Streptococcus salivarius 97.0 96.7 96.8 97.7
21 Parvimonas micra 97.0 95.8 96.9 97.7
23 Haemophilus parainfluenzae 96.9 98.7 97.3 95.3
24 Streptococcus intermedius 96.8 97.9 95.5 97.9
25 Veillonella atypica 96.4 95.0 95.7 98.1
26 Rothia mucilaginosa 96.1 96.2 96.2 96.0
27 Dialister invisus 95.4 95.8 94.6 96.2
28 Campylobacter concisus 95.2 95.8 94.8 95.3
29 Capnocytophaga gingivalis 94.9 95.8 94.9 94.4
29 TM7_[G-1] sp._oral_taxon_346 94.9 95.0 96.0 93.4
31 Prevotella nigrescens 94.2 95.0 94.2 93.7
32 Kingella oralis 93.0 92.9 94.2 91.5
33 Bergeyella sp._oral_taxon_322 92.7 92.9 91.9 93.7
34 Gemella haemolysans 92.5 91.6 94.2 90.8
35 Actinomyces sp._oral_taxon_169 92.3 93.7 93.0 90.6
36 Actinomyces sp._oral_taxon_180 92.1 94.1 92.2 90.8
36 Eikenella corrodens 92.1 95.4 92.6 89.7
38 Prevotella melaninogenica 91.6 92.1 90.6 92.7
38 TM7_[G-1] sp._oral_taxon_349 91.6 92.9 92.4 89.7
40 Campylobacter showae 91.3 91.6 91.0 91.5
41 Actinomyces johnsonii 91.1 91.6 91.7 90.1
42 Capnocytophaga granulosa 90.8 89.5 92.4 89.4
43 Selenomonas sp._oral_taxon_136 90.7 89.1 90.4 92.0
44 Bacteroidales_[G-2] sp._oral_taxon_274 90.4 88.3 91.5 90.1
45 Selenomonas artemidis 90.3 90.4 90.4 90.1
46 Capnocytophaga leadbetteri 90.2 90.0 91.7 88.5
46 Actinomyces massiliensis 90.2 92.1 91.3 87.6
48 Fretibacterium sp._oral_taxon_360 90.0 91.2 90.4 88.7
49 Gemella morbillorum 89.8 89.5 90.3 89.4
50 Streptococcus sp._oral_taxon_074 89.3 87.0 91.0 88.3
51 Rothia aeria 89.2 90.0 91.9 85.2
52 Treponema socranskii 88.8 88.7 88.4 89.4
53 Leptotrichia hongkongensis 88.7 85.4 89.2 89.9
54 Streptococcus mutans 88.4 84.9 88.1 90.8
54 Cardiobacterium hominis 88.4 91.6 89.2 85.4
54 TM7_[G-1] sp._oral_taxon_952 88.4 90.0 90.3 85.0
57 Actinomyces gerencseriae 87.9 84.9 87.0 90.6
58 Leptotrichia wadei 87.7 86.6 87.0 89.2
59 Anaeroglobus geminatus 87.6 89.1 86.5 88.3
60 Streptococcus parasanguinis_II 87.4 87.4 84.3 91.5
61 Alloprevotella tannerae 87.3 90.0 85.6 88.0
62 Actinomyces sp._oral_taxon_171 87.2 88.7 87.4 86.2
62 Capnocytophaga sputigena 87.2 88.7 89.0 84.0
64 Fusobacterium nucleatum_subsp._nucleatum 86.8 90.8 86.5 85.0
65 Catonella morbi 86.6 87.0 87.2 85.7
66 Corynebacterium durum 85.6 88.7 86.8 82.2
66 Selenomonas infelix 85.6 88.7 85.6 83.8
68 Prevotella denticola 85.5 82.8 84.7 88.0
69 Prevotella sp._oral_taxon_317 85.2 88.3 83.6 85.4
70 Leptotrichia sp._oral_taxon_212 84.8 87.4 87.0 80.5
71 Porphyromonas sp._oral_taxon_279 84.5 83.7 85.7 83.3
72 Neisseria sicca 83.5 80.8 86.3 81.5
73 Gemella sanguinis 83.1 85.4 80.9 84.7
74 Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brac 83.0 87.4 82.5 81.2
75 Tannerella forsythia 82.9 82.0 83.8 82.4
75 Neisseria flavescens 82.9 77.8 85.4 82.4
77 Prevotella sp._oral_taxon_300 82.5 80.8 81.4 85.0
78 Prevotella maculosa 82.3 80.8 81.4 84.3
79 Neisseria elongata 82.2 80.3 84.1 80.8
80 Selenomonas flueggei 82.0 79.9 82.9 81.9
81 Selenomonas sp._oral_taxon_892 81.8 85.4 83.6 77.5
82 Actinomyces israelii 81.7 79.9 80.9 83.8
83 Oribacterium sp._oral_taxon_078 81.4 78.2 80.1 84.7
84 Lachnoanaerobaculum saburreum 81.3 78.7 82.5 81.2
85 Megasphaera micronuciformis 81.1 79.1 78.5 85.4
85 Prevotella salivae 81.1 73.2 80.9 85.7
87 Streptococcus parasanguinis_I 80.6 80.3 78.2 84.0
88 Cardiobacterium valvarum 80.5 81.2 82.1 77.9
89 Prevotella oulorum 80.1 82.8 77.6 81.9
89 Veillonellaceae_[G-1] sp._oral_taxon_150 80.1 78.2 79.1 82.4
91 Leptotrichia sp._oral_taxon_417 79.7 74.5 80.3 81.7
92 Veillonella rogosae 79.6 82.4 82.7 73.9
93 Streptococcus anginosus 79.5 81.2 78.0 80.5
94 Veillonellaceae_[G-1] sp._oral_taxon_155 79.4 77.4 77.8 82.6
95 Fretibacterium fastidiosum 79.2 79.1 80.1 78.2
96 Lautropia mirabilis 78.2 82.8 78.9 74.6
97 Actinobaculum sp._oral_taxon_183 78.0 78.7 78.3 77.2
98 Fusobacterium periodonticum 77.7 74.9 82.1 73.5
99 Selenomonas sp._oral_taxon_919 77.2 84.1 75.6 75.4
100 Selenomonas sp._oral_taxon_137 76.8 80.3 76.9 74.6
101 Atopobium parvulum 76.5 76.2 73.8 80.3
101 Streptococcus lactarius 76.5 80.3 75.1 76.1
103 Kingella denitrificans 76.3 72.0 76.0 79.1
104 Capnocytophaga sp._oral_taxon_336 75.1 77.4 75.5 73.5
105 Lachnospiraceae_[G-3] sp._oral_taxon_100 73.7 77.0 73.6 72.1
106 Atopobium rimae 73.3 72.4 73.1 74.2
107 Streptococcus constellatus 73.0 72.8 71.7 74.9
108 Tannerella sp._oral_taxon_286 72.8 69.9 74.9 71.8
108 Selenomonas sp._oral_taxon_134 72.8 75.7 72.9 70.9
110 Leptotrichia buccalis 72.0 64.9 76.0 70.9
111 Selenomonas sp._oral_taxon_146 71.9 73.2 72.9 69.7
112 Leptotrichia sp._oral_taxon_215 71.8 75.3 72.4 69.0
113 Leptotrichia sp._oral_taxon_392 71.4 74.5 74.9 65.0
114 TM7_[G-5] sp._oral_taxon_356 71.2 74.5 72.2 68.1
115 Dialister pneumosintes 70.6 74.1 70.2 69.2
115 Prevotella sp._oral_taxon_472 70.6 71.5 75.3 64.1
117 Streptococcus sp._oral_taxon_056 70.6 69.0 73.3 68.1
118 Fretibacterium sp._oral_taxon_359 70.5 66.9 71.1 71.6
119 Solobacterium moorei 70.4 69.0 70.0 71.6
120 Abiotrophia defectiva 70.1 69.9 72.9 66.7
121 Lachnoanaerobaculum umeaense 69.3 69.9 70.2 67.8
122 Parvimonas sp._oral_taxon_393 69.2 69.9 70.2 67.4
123 Actinomyces meyeri 67.8 71.1 69.7 63.4
124 Centipeda periodontii 67.7 64.0 69.1 67.8
125 Leptotrichia shahii 67.6 72.4 66.6 66.2
126 Olsenella sp._oral_taxon_807 66.9 61.9 67.1 69.2
127 Actinobaculum sp._oral_taxon_848 66.3 64.9 66.1 67.4
128 Leptotrichia hofstadii 66.0 63.6 68.2 64.6
128 Neisseria oralis 66.0 66.1 69.0 62.2
128 Prevotella histicola 66.0 62.3 62.8 72.1
131 Actinomyces sp._oral_taxon_178 65.8 61.1 65.3 69.0
132 Stomatobaculum longum 65.7 62.3 63.7 70.2
132 TM7_[G-1] sp._oral_taxon_352 65.7 60.3 70.6 62.4
134 Capnocytophaga sp._oral_taxon_326 65.4 64.4 68.1 62.4
135 Prevotella oralis 64.5 63.6 65.2 64.1
136 Streptococcus sinensis 63.9 65.7 62.1 65.3
137 Alloprevotella sp._oral_taxon_308 63.5 68.6 61.9 62.7
138 Porphyromonas sp._oral_taxon_284 63.3 64.4 66.8 58.2
138 Prevotella pallens 63.3 63.2 61.7 65.5
140 Aggregatibacter sp._oral_taxon_458 63.2 65.7 65.3 58.9
141 Porphyromonas endodontalis 63.1 69.5 63.7 58.7
142 Prevotella saccharolytica 63.0 65.3 65.0 59.2
143 Selenomonas sp._oral_taxon_126 62.0 62.3 63.4 60.1
144 Lachnoanaerobaculum orale 61.1 63.2 58.5 63.4
145 Treponema maltophilum 61.0 59.0 62.3 60.3
146 Peptostreptococcaceae_[XI][G-7] [Eubacterium]_yuri 60.2 64.0 62.3 55.4
147 Veillonella denticariosi 60.1 56.5 60.8 61.3
148 Sphingomonas echinoides 59.8 64.9 61.7 54.5
149 Streptococcus australis 59.7 57.3 59.0 62.0
150 TM7_[G-1] sp._oral_taxon_348 59.6 57.7 63.4 55.9
151 TM7_[G-1] sp._oral_taxon_488 57.8 56.9 61.2 54.0
152 Ruminococcaceae_[G-1] sp._oral_taxon_075 56.9 58.2 59.7 52.6
153 Selenomonas sp._oral_taxon_936 56.8 58.2 56.3 56.8
154 Prevotella buccae 56.7 49.4 54.7 63.4
155 Leptotrichia sp._oral_taxon_225 56.4 60.3 58.7 51.4
155 Prevotella pleuritidis 56.4 55.2 59.4 53.3
157 Alloprevotella rava 56.2 57.7 56.9 54.5
158 Aggregatibacter aphrophilus 56.1 57.7 59.6 50.7
159 Treponema denticola 56.0 59.4 58.1 51.4
160 Peptostreptococcus stomatis 55.9 64.0 55.1 52.3
161 Pseudomonas fluorescens 55.5 53.6 57.0 54.5
162 Actinomyces sp._oral_taxon_170 55.2 60.3 57.0 50.0
163 Porphyromonas gingivalis 55.1 51.0 56.3 55.9
164 Haemophilus sp._oral_taxon_036 55.0 59.4 54.7 52.8
165 Johnsonella ignava 54.6 54.0 56.3 52.8
166 Porphyromonas catoniae 54.4 57.7 56.5 49.8
167 Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infi 54.2 47.3 54.7 57.5
168 Prevotella sp._oral_taxon_292 53.8 49.4 54.3 55.6
169 Fretibacterium sp._oral_taxon_362 53.6 53.6 53.8 53.3
170 TM7_[G-1] sp._oral_taxon_347 53.2 58.2 54.3 49.1
171 Leptotrichia sp._oral_taxon_219 52.7 49.4 54.2 52.6
172 Aggregatibacter segnis 52.1 56.1 54.9 46.2
173 TM7_[G-3] sp._oral_taxon_351 51.9 45.6 55.4 50.9
174 Fusobacterium sp._oral_taxon_370 51.1 45.6 55.6 48.4
175 Prevotella sp._oral_taxon_313 50.5 53.1 46.4 54.2
176 Prevotella loescheii 50.4 52.3 54.5 43.9
177 Desulfobulbus sp._oral_taxon_041 50.3 48.1 50.9 50.7
178 Capnocytophaga sp._oral_taxon_864 49.1 51.9 52.0 43.9
179 Ottowia sp._oral_taxon_894 48.4 49.4 50.2 45.5
180 Microbacterium flavescens 48.0 50.2 49.5 44.8
181 Leptotrichia sp._oral_taxon_498 47.8 42.3 48.2 50.5
182 Granulicatella elegans 47.3 52.7 45.5 46.5
183 Filifactor alocis 46.8 50.2 46.8 44.8
184 Campylobacter curvus 46.2 45.6 46.4 46.2
185 Mycoplasma salivarium 45.0 47.7 45.3 43.2
186 Capnocytophaga sp._oral_taxon_338 44.8 42.7 44.4 46.5
187 Capnocytophaga sp._oral_taxon_902 44.3 43.1 46.6 42.0
188 Treponema sp._oral_taxon_231 43.6 51.5 45.3 37.1
189 Tannerella sp._oral_taxon_808 43.1 39.3 45.7 41.8
190 Prevotella intermedia 42.8 40.2 43.3 43.7
191 TM7_[G-6] sp._oral_taxon_870 42.7 43.9 44.2 39.9
192 Mitsuokella sp._oral_taxon_131 42.2 35.6 41.0 47.7
193 Haemophilus haemolyticus 42.0 47.3 41.3 39.9
194 Prevotella veroralis 41.7 44.4 40.8 41.3
195 Veillonellaceae_[G-1] sp._oral_taxon_129 40.9 37.7 40.8 43.0
195 Aggregatibacter paraphrophilus 40.9 45.2 42.2 36.6
197 Pseudoramibacter alactolyticus 40.9 33.5 41.5 44.1
198 Bergeyella sp._oral_taxon_907 40.6 39.7 42.8 38.3
199 Bifidobacterium dentium 40.5 33.9 37.9 47.7
199 TM7_[G-1] sp._oral_taxon_869 40.5 41.8 41.5 38.5
201 Prevotella sp._oral_taxon_306 40.3 36.0 39.5 43.7
202 Prevotella dentalis 39.3 40.2 36.5 42.5
203 Shuttleworthia satelles 39.2 34.7 37.5 43.9
204 Veillonella sp._oral_taxon_780 39.1 40.6 42.4 34.0
205 Capnocytophaga sp._oral_taxon_412 38.7 38.9 41.5 35.0
206 Neisseria subflava 38.6 39.3 37.4 39.7
206 Scardovia wiggsiae 38.6 37.2 37.7 40.4
208 Leptotrichia sp._oral_taxon_223 37.8 42.3 36.5 37.1
209 Peptostreptococcaceae_[XI][G-6] [Eubacterium]_noda 37.2 35.6 37.0 38.5
209 Selenomonas sp._oral_taxon_937 37.2 36.4 35.2 40.1
211 Bacteroidetes_[G-5] sp._oral_taxon_511 36.8 41.0 37.2 33.8
212 Capnocytophaga sp._oral_taxon_323 36.7 36.0 37.4 36.2
213 Selenomonas sp._oral_taxon_149 36.4 30.5 33.8 43.2
213 Selenomonas sp._oral_taxon_442 36.4 30.1 37.5 38.5
215 SR1_[G-1] sp._oral_taxon_874 36.3 39.3 40.3 29.6
216 Porphyromonas sp._oral_taxon_275 36.0 36.4 37.7 33.6
217 Selenomonas sp._oral_taxon_478 35.9 31.4 38.4 35.2
218 Alloprevotella sp._oral_taxon_473 35.8 39.7 36.8 32.4
219 Neisseria bacilliformis 35.5 35.1 35.4 35.9
220 Capnocytophaga sp._oral_taxon_324 35.4 32.6 38.1 33.3
221 Veillonellaceae_[G-1] sp._oral_taxon_145 35.2 35.1 36.1 34.0
222 Atopobium sp._oral_taxon_199 34.9 36.0 36.1 32.6
223 Lachnospiraceae_[G-8] sp._oral_taxon_500 34.8 33.1 35.7 34.5
224 TM7_[G-2] sp._oral_taxon_350 34.6 34.7 34.7 34.5
225 Bacteroidaceae_[G-1] sp._oral_taxon_272 33.1 26.8 33.9 35.7
225 Capnocytophaga sp._oral_taxon_903 33.1 31.8 36.1 30.0
225 Selenomonas dianae 33.1 28.9 35.0 32.9
228 Prevotella baroniae 33.0 32.2 33.4 32.9
229 Leptotrichia goodfellowii 32.2 37.2 34.1 27.0
230 Prevotella micans 31.4 29.3 32.7 31.0
231 Porphyromonas sp._oral_taxon_278 31.0 31.8 31.9 29.3
232 Prevotella sp._oral_taxon_314 30.8 30.1 31.4 30.5
233 Haemophilus parahaemolyticus 30.3 37.2 31.8 24.4
234 Anaerolineae_[G-1] sp._oral_taxon_439 30.2 25.5 30.0 33.1
235 Selenomonas sp._oral_taxon_133 30.1 28.9 30.5 30.3
236 Treponema lecithinolyticum 29.5 30.1 31.2 26.8
237 Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saph 28.3 22.2 31.4 27.7
238 Treponema sp._oral_taxon_237 27.0 32.2 28.9 21.6
239 Neisseria pharyngis 25.8 25.1 25.5 26.8
240 Leptotrichia sp._oral_taxon_879 25.4 25.9 25.6 24.9
241 Brevundimonas diminuta 25.3 27.6 25.8 23.2
242 Bradyrhizobium elkanii 24.9 26.4 22.7 26.8
242 Capnocytophaga sp._oral_taxon_332 24.9 29.7 26.2 20.4
244 Megasphaera sp._oral_taxon_123 24.5 32.2 24.2 20.7
245 Capnocytophaga sp._oral_taxon_380 22.2 20.5 24.9 19.7
246 Treponema vincentii 22.0 23.0 23.5 19.5
247 Prevotella sp._oral_taxon_376 21.4 26.8 23.5 15.7
248 Prevotella sp._oral_taxon_526 21.1 21.8 21.7 20.0
249 Aggregatibacter sp._oral_taxon_513 20.2 21.8 23.1 15.5
250 Lactobacillus gasseri 19.9 18.0 17.9 23.7
251 Fretibacterium sp._oral_taxon_358 19.3 16.7 19.3 20.7
252 Mitsuokella sp._oral_taxon_521 18.7 18.4 19.9 17.4
253 Fretibacterium sp._oral_taxon_361 18.5 15.5 19.1 19.2
254 Prevotella sp._oral_taxon_475 18.2 19.2 20.0 15.3
255 Treponema medium 18.1 16.3 19.5 17.4
256 Johnsonella sp._oral_taxon_166 16.7 12.6 18.6 16.7
257 Streptococcus sobrinus 15.9 13.8 14.4 19.0
258 Prevotella multiformis 15.5 16.3 15.5 15.0
259 Butyrivibrio sp._oral_taxon_080 14.5 15.1 15.9 12.4
260 GN02_[G-2] sp._oral_taxon_873 13.7 10.9 15.0 13.6
261 Aggregatibacter actinomycetemcomitans 12.3 12.1 11.4 13.6
262 Leptothrix sp._oral_taxon_025 10.9 13.4 11.4 8.9
263 Atopobium sp._oral_taxon_416 8.7 5.4 8.5 10.8
264 Sphingomonas sp._oral_taxon_006 7.2 5.9 7.9 7.0
265 Porphyrobacter tepidarius 6.9 7.1 6.1 7.7
266 Treponema sp._oral_taxon_247 4.8 6.3 4.5 4.2
267 Pyramidobacter piscolens 4.0 2.9 3.8 4.9

aBacteria in the table are rank ordered according to their prevalence in the overall cohort

Dashed line inserted below top 20 taxa