Table 7. Differential expression (fold = infected/non-infected) with a FDR less than 0.05 at one or more time points and the averaged expression level (Exp) of genes in MHC antigen processing and presentation between infected and non-infected macrophages at 3, 6, 9, 12, 15 and 18 hours post infection.

Gene	3hr	6hr	9hr	12hr	15hr	18hr	FDR	Exp
SLA-DMB	-1.0	1.0	-1.1	-1.7	-2.7	-4.3	0.00	10386
SLA-DMA	-1.0	1.0	1.1	-1.0	-1.4	-2.1	0.02	4165
SLA-DOA	1.2	1.4	1.1	1.2	1.5	1.9	0.00	936
SLA-DOB	1.1	1.2	1.3	1.5	1.7	1.9	0.01	93
CD74 / CLIP	1.0	1.2	1.2	1.4	1.4	1.2	0.00	3546
CTSA	-1.1	-1.1	1.0	-1.1	-1.3	-1.9	0.11	34618
CTSB	-1.1	-1.2	-1.0	-1.2	-2.0	-3.8	0.04	46406
CTSC	-1.2	-1.3	-1.2	-1.4	-1.4	-1.5	0.02	1757
CTSH	-1.1	-1.1	1.1	-1.0	-1.7	-2.6	0.04	44195
CTSL	-1.1	-1.1	-1.1	-1.4	-2.1	-4.8	0.02	22078
CTSS	1.1	1.0	-1.2	-1.3	-2.4	-5.8	0.03	36684
CTSV	1.1	-1.0	-1.1	-1.2	-1.7	-2.9	0.02	6988
CALR	1.1	1.0	-1.1	-1.3	-1.5	-2.3	0.02	24056
PSMA1	1.0	1.1	1.0	-1.1	-1.4	-1.6	0.05	2436
PSMB1	-1.2	-1.2	-1.0	-1.2	-1.6	-1.9	0.02	18615
PSMB10	1.1	1.2	-1.1	-1.3	-1.4	-2.0	0.02	14974
PSMC1	-1.1	1.0	-1.0	-1.1	-1.3	-1.7	0.01	3144
PSMC3	-1.1	-1.1	-1.1	-1.2	-1.3	-1.7	0.02	14239
PSMC6	-1.2	-1.2	-1.1	-1.1	-1.2	-1.7	0.03	1433
PSMD1	-1.0	-1.3	-1.5	-1.5	-1.9	-2.3	0.00	4907
PSMD11	1.0	-1.1	-1.1	-1.1	-1.4	-1.5	0.02	915
PSMD12	-1.0	-1.1	-1.3	-1.4	-1.5	-1.6	0.01	449
PSMD2	1.1	1.0	-1.3	-1.3	-1.6	-2.0	0.01	10928
PSMD5	-1.1	-1.2	-1.1	-1.1	-1.3	-1.6	0.01	411
PSMD7	-1.2	-1.1	-1.1	-1.8	-1.9	-2.0	0.01	1101
SEL1L	-1.2	-1.3	-1.2	-1.3	-2.1	-2.7	0.00	621