Table 5. Decompression speed.
Dataset | Decompression Speed | ||||||||
---|---|---|---|---|---|---|---|---|---|
LFastqC | LFQC | SPRING | DSRC2 | SeqSqueeze1 | Quip | FQZComp | Gzip | Bzip2 | |
SRR001471 | 2m16s | 3m20s | 0m4 | 0m10s | 1m45s | 0m47s | 0m13s | 0m08s | 0m30s |
SRR003177 | 10m43s | 14m48s | 0m16 | 0m22s | 10m03s | 3m40s | 1m21s | 0m34s | 3m00s |
SRR003186 | 7m59s | 11m40s | 0m13 | 0m20s | 7m29s | 2m38s | 0m58s | 0m43s | 2m08s |
SRR007215_1 | 6m08s | 7m14s | - | 0m11s | 2m23s | - | - | 0m23s | 1m16s |
SRR010637 | 20m59s | 23m28s | - | 0m26s | 8m21s | - | - | 1m27s | 4m12s |
SRR013951_2 | 35m27s | 37m27s | 0m54s | 0m57s | 25m30s | 9m39s | 3m12s | 2m34s | 8m28s |
SRR027520_1 | 48m27s | 56m12s | 1m09s | 2m34s | 33m44s | 15m38s | 5m01s | 3m51s | 13m57s |
SRR027520_2 | 55m49s | 56m59s | 1m09s | 4m01s | 34m00s | 16m03s | 5m24s | 4m13s | 13m05s |
SRR554369_1 | 5m54s | 4m46s | 0m5s | 0m27s | 5m16s | 1m24s | 0m26s | 0m6s | 0m48 |
SRR327342_1 | 40m30s | 44m38s | 0m33s | 0m42s | 32m12s | 8m48s | 2m49s | 1m56s | 5m49s |
SRR1284073 | 16m37s | 18m44s | 0m31s | - | - | 2m18s | - | 0m19s | 2m46s |
SRR9046049 | 35m52s | 40m29s | 2m45s | - | - | - | - | 6m18s | 1m10s |
SRR8858470 | 62m59s | 68m12s | 2m36s | - | - | - | - | 8m50s | 2m12s |
ERR3307082 | 56m40s | 59m38s | 1m30 | - | - | - | - | 2m13s | 9m16s |
ERR637420 | 2m17s | 4m3s | 0m12 | 0m14s | - | - | - | 0m4s | 0m34s |