Table 2. Number of up- and down-regulated genes for empirical Bayes and treat method.

	Empirical Bayes			Treat method
	AC vs SCC	AC vs N	SCC vs N	AC vs SCC	AC vs N	SCC vs N
Down	3910	6588	7145	141	476	678
Not	14095	8561	7919	22012	21549	21105
Up	4185	7041	7126	37	165	407