TABLE 1.
CheckM output | Beijerinckiaceae bin from coassembly | USCα AHI genome from reassembly |
---|---|---|
Marker lineage | o__Rhizobiales (UID3654) | o__Rhizobiales (UID3654) |
No. of genomes | 92 | 92 |
No. of markers | 481 | 481 |
No. of marker sets | 319 | 319 |
0 copies (missing) | 36 | 32 |
1 copy | 444 | 449 |
2 copies | 1 | 0 |
3 copies | 0 | 0 |
4 copies | 0 | 0 |
≥5 copies | 0 | 0 |
Completeness (%) | 90.56 | 91.64 |
Contamination (%) | 0.31 | 0.00 |
Strain heterogeneity (%) | 0.00 | 0.00 |
No. of unique markers (of 43) | 42 | 42 |
No. of multicopy markers | 0 | 0 |
Insertion branch UID | UID3666 | UID3666 |
Taxonomy (contained) | k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae | k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae |
Taxonomy (sister) | Unresolved | Unresolved |
GC content (%) | 59.1 | 59 |
Genome size (Mbp) | 3.03 | 3.26 |
Gene count | 3,388 | 3,928 |
Coding density (fraction) | 0.82 | 0.81 |
Translation table | 11 | 11 |
No. of descendant genomes | 3 | 3 |
Lineage | ||
GC content (%) | ||
Mean | 60.6 | 60.6 |
SD | 2.6 | 2.6 |
Genome size (Mbp) | ||
Mean | 4.28 | 4.28 |
SD | 0.13 | 0.13 |
Gene count | ||
Mean | 3,861 | 3,861 |
SD | 86 | 86 |
Values that are different between the two draft genomes are marked in bold font.