FIG 3.

Speed comparison between SeqSero1 and SeqSero2. (a) Comparison of run times for predicting serotypes from raw sequencing reads. Average number of seconds for analyzing a genome is shown for each workflow. BWA-MEM was used for read mapping for both SeqSero1 and the microassembly workflow of SeqSero2. (b) Comparison of run times for predicting serotypes from genome assemblies. Average number of seconds for analyzing a genome is shown for each workflow. Run time was defined as the elapsed real time (wall time) for predicting the serotype of a genome using a single processor.