Table 1.
RNA-seq reads per sample. The number of total reads sequenced from each sample and the number of which mapped to the T. gondii genome
| Sample Type | DPI | Replicate ID | Input Reads | Toxo Reads | % Toxo | Reference |
|---|---|---|---|---|---|---|
| Tachyzoites | 0 | 1 | 25837455 | 11650902 | 45.09 | This Study |
| 2 | 18310484 | 15269361 | 83.39 | This Study | ||
| Whole Brain | 10 | 1 | 102581171 | 116278 | 0.11 | [6] |
| 2 | 125546828 | 97611 | 0.08 | [6] | ||
| 3 | 81630704 | 51309 | 0.06 | [6] | ||
| Whole Brain | 28 | 1 | 103765423 | 167181 | 0.16 | [6] |
| 2 | 113094439 | 137975 | 0.12 | [6] | ||
| 3 | 114177191 | 162423 | 0.14 | [6] | ||
| Bradyzoites | 28 | A | 40656512 | 21075587 | 51.84 | This Study |
| C | 39129732 | 36606828 | 93.55 | This Study | ||
| Bradyzoites | 90 | A | 37700412 | 35412305 | 93.93 | This Study |
| B | 41174415 | 25965460 | 63.06 | This Study | ||
| Bradyzoites | 120 | B | 46857160 | 40734629 | 86.93 | This Study |
| C | 45074363 | 34443785 | 76.42 | This Study |