Table 1.

Summary statistics of the SV true sets

	NA12878 deletion	NA12878 insertion	CHM13 deletion	CHM13 insertion	CHM1 deletion	CHM1 insertion	Chr20 deletion	Chr20 insertion
SV count	4352	5783	10,671	20,497	10,784	15,158	96	181
Median size (bp)	312	300	304	318	69	103	318	296
Longest size (bp)	97,696	41,311	26,862	32,727	18,511	71,339	10,937	41,310
Shortest size (bp)	34	32	50	51	31	32	50	40