Table 1.
Passport and sequence archive information for plant materials used. Raw sequencing data for each accession are deposited in the Sequence Read Archive (SRA) at the National Center for Biotechnology Information (NCBI).
| Name | Collectiona | Accession ID | Collection location | Altitude (m a.s.l.) | Sequencing technology | SRA IDb |
|---|---|---|---|---|---|---|
| WGS reference information | ||||||
| PI 478407 | USDA | PI 478407 | −17.2333, −67.9166 | 3800 | PacBio | SRR9661228 |
| PI 478407 | USDA | PI 478407 | −17.2333, −67.9166 | 3800 | Hi‐C (Illumina) | SRR9661229 |
| PI 478407 | USDA | PI 478407 | −17.2333, −67.9166 | 3800 | WGS (Illumina) | SRR4425239c |
| PI 478407 | USDA | PI 478407 | −17.2333, −67.9166 | 3800 | RNA‐Seq | SRR4425240–SRR4425243c |
| Diversity panel information | ||||||
| P1 | UNALM | BYU 1780 | −15.6967, −70.20510 | 3830 | WGS (Illumina) | SRR9620980 |
| P2 | UNALM | BYU 1781 | −15.7268, −70.23560 | 3838 | WGS (Illumina) | SRR9640749 |
| P4 | UNALM | BYU 1785 | −15.7693, −70.27050 | 3860 | WGS (Illumina) | SRR9640748 |
| U7 | USDA | PI 510525 | −16.3628, −69.2765 | NA | WGS (Illumina) | SRR9640742 |
| U8 | USDA | PI 510526 | −16.2833, −69.2833 | NA | WGS (Illumina) | SRR9640741 |
| U9 | USDA | PI 510527 | −16.0000, −69.7833 | 3810 | WGS (Illumina) | SRR9640740 |
| U12 | USDA | PI 510530 | −16.4500, −70.2333 | NA | WGS (Illumina) | SRR9640747 |
| U13 | USDA | PI 665279 | −17.2333, −67.9166 | 3700 | WGS (Illumina) | SRR9640746 |
| U14 | USDA | PI 665280 | −17.2333, −67.9166 | 3700 | WGS (Illumina) | SRR9640745 |
| U15 | USDA | PI 665281 | −17.2333, −67.9166 | 3700 | WGS (Illumina) | SRR9640744 |
| U16 | USDA | PI 665282 | −17.2333, −67.9166 | 3700 | WGS (Illumina) | SRR9640743 |
| B17 | UMSA | Bol‐1.1 | −15.7472, −68.8091 | 3845 | WGS (Illumina) | SRR9640755 |
| B18 | UMSA | Bol‐3.1 | −16.5344, −68.0622 | 3445 | WGS (Illumina) | SRR9640754 |
| B20 | UMSA | Bol‐19.1 | −17.8241, −67.7702 | 3721 | WGS (Illumina) | SRR9640757 |
| B21 | UMSA | Bol‐20.123 | −17.7850, −68.1447 | 4025 | WGS (Illumina) | SRR9640756 |
| B22 | UMSA | Bol‐21.123 | −17.6483, −67.2072 | 3777 | WGS (Illumina) | SRR9640751 |
| B23 | UMSA | Bol‐22.123 | −18.2166, −67.0333 | 3707 | WGS (Illumina) | SRR9640750 |
| B24 | UMSA | Bol‐23.123 | −16.5344, −68.0622 | 3445 | WGS (Illumina) | SRR9640753 |
| B25 | UMSA | Bol‐24.123 | −16.6740, −68.3183 | 3900 | WGS (Illumina) | SRR9640752 |
| B26 | UMSA | Bol‐25.123 | −16.5344, −68.0622 | 3445 | WGS (Illumina) | SRR9640759 |
| B27 | UMSA | Bol‐26.123 | −16.5344, −68.0622 | 3445 | WGS (Illumina) | SRR9640758 |
| B28 | UMSA | Bol‐28.123 | −16.6740, −68.3183 | 3900 | WGS (Illumina) | SRR9640732 |
| B29 | UMSA | Bol‐29.123 | −16.5344, −68.0622 | 3445 | WGS (Illumina) | SRR9640733 |
| B30 | UMSA | Bol‐30.123 | −17.2500, −67.9166 | 3800 | WGS (Illumina) | SRR9640734 |
| B31 | UMSA | Bol‐4.3 | −16.6740, −68.3183 | 3900 | WGS (Illumina) | SRR9640735 |
| B32 | UMSA | Bol‐6.2 | −16.6740, −68.3183 | 3900 | WGS (Illumina) | SRR9640736 |
| B33 | UMSA | Bol‐7.1 | −16.6740, −68.3183 | 3900 | WGS (Illumina) | SRR9640737 |
| B34 | UMSA | Bol‐8.1 | −16.6740, −68.3183 | 3900 | WGS (Illumina) | SRR9640738 |
| B35 | UMSA | Bol‐13.3 | −16.6740, −68.3183 | 3900 | WGS (Illumina) | SRR9640739 |
| B36 | UMSA | Bol‐27.123 | −16.6740, −68.3183 | 3900 | WGS (Illumina) | SRR9640731 |
m a.s.l. = meters above sea level; NA = not available.
a
Germplasm collection center. USDA = United States Department of Agriculture, Ames, Iowa, USA; UNALM = Universidad Nacional Agraria La Molina, Lima, Peru; UMSA = Universidad Major de San Andrés La Paz, Bolivia; BYU = Brigham Young University, Provo, Utah, USA.
b
Sequence Read Archive (SRA) identifier.
c
Deposited in BioProject ID PRJNA326220. All other sequences are deposited in BioProject ID PRJNA552289.