Extended Data Table 2. Features of individual FA core complex subunits and structural models.
Protein | Length (aa) | Sequence features | Models generated in this study | Maps used for modelling | Sequence identity / similarity between Gallus gallus and Homo sapiens (%) |
---|---|---|---|---|---|
FANCA | 1,421 | α-helical | N/A | N/A | 49.1 / 65.6 |
FANCB | 867 | Possible (β-propeller, plus α-helical | De novo modelling of SSEs* | Focused map for top (EMD-10291), middle (EMD-10292), and base regions (EMD-10293), consensus map with T=5 (EMD-10290) and subcomplex map (EMD-10294) | 44.1 / 63.2 |
FANCC | 559 | α-helical | SSEs placed in maps, not assigned | Focused map for base (EMD-10293) | 49.0 / 65.1 |
FANCE | 520 | α-helical Crystal structure of human orthologue (C-terminal half; PDB 2ILR) | SSEs placed in maps, not assigned | Focused map for base (EMD-10293) | 40.9 / 54.1 |
FANCF | 350 | α-helical Crystal structure of human orthologue (C-terminal half; PDB 2IQC) | C-terminal region from homology model based on PDB 2IQC | Focused map for base (EMD-10293) | 38.5 / 51.6 |
FANCG | 648 | α-helical (TPR) | TPR domain from homology model (I- TASSER) | Focused map for top region (EMD-10291) | 37.3 / 52.9 |
FANCL | 373 | ELF, URD and RING domains. Crystal structures of human (central domain, PDB 3ZQS; RING domain, PDB 4CCG) and Drosophila orthologues (full-length, PDB 3K1L) | ELF domain in FANCLtop. ELF, URD and RING domains in FANCLbase. Homology models based on PDB 3K1L | Focused map for top (EMD-10291) and base (EMD-10293) | 69.9 / 82.7 |
FAAP100 | 888 | Possible β-propeller, plus α-helical | De novo modelling of SSEs | Focused map for top (EMD-10291), middle (EMD-10292), and base regions (EMD-10293), consensus map with T=5 (EMD-10290) and subcomplex map (EMD-10294) | 55.6 / 68.7 |
Footnote: * SSE, secondary structure elements