Table 1.

Comparison of differential proteome-wide protein interaction network parameters between MRU and existing genome-scale metabolic models of methanogenic archaea. Network radius and network density were calculated as 1 and 0, respectively.

Network parameters	Dynamic protein networks				Differential protein networks
	MRU	MAC	MBA	MMP	MRU	MAC	MBA	MMP
Clustering coefficient	0.288	0.279	0.276	0.288	0.182	0.242	0.235	0.252
Connected components	15	16	12	15	11	21	16	12
Network diameter	22	23	22	22	8	9	24	27
Path length	7.173	7.189	7.813	7.173	2.17	7.429	8.532	7.745
# of neighbors	7.693	10.471	7.911	7.693	6.319	10.061	7.211	7.085
# of nodes	462	594	384	462	426	590	380	457