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. 2019 Oct 28;116(46):23243–23253. doi: 10.1073/pnas.1912175116

Fig. 1.

Fig. 1.

Phasing and assembly of STRs/VNTRs. The targeted phasing of tandem repeat sequences in 3 NHPs: chimpanzee, gorilla, and orangutan. 10x Genomics linked reads from each of the great apes were mapped to the human genome reference (GRCh38) followed by the identification of SNVs and phasing of their genotypes using Long Ranger. Next, the phased SNV genotypes were used to partition the PacBio reads of each individual into the 2 parental haplotypes followed by the assembly of 2 haplotype-partitioned contigs per locus. Materials and Methods has more details.