Table 2:
Detailed classification of repeat sequences identified in Trochodendron aralioides
| Type | de novo + Repbase | TE proteins | Combined TEs | |||
|---|---|---|---|---|---|---|
| Length (bp) | % in genome | Length (bp) | % in genome | Length (bp) | % in genome | |
| DNA | 38,995,970 | 2.416 | 15,755,819 | 0.976 | 50,171,660 | 3.108 |
| LINE | 13,503,128 | 0.837 | 39,566,384 | 2.451 | 47,644,917 | 2.952 |
| SINE | 143,207 | 0.00887 | 0 | 0 | 143,207 | 0.00887 |
| LTR | 859,515,257 | 53.249 | 327,748,739 | 20.305 | 908,751,606 | 56.23 |
| Unknown | 13,395,729 | 0.83 | 0 | 0 | 13,395,729 | 0.83 |
| Total | 922,704,692 | 57.164 | 382,460,417 | 23.694 | 1,006,355,712 | 62.347 |
De novo + Repbase: annotations predicted de novo by RepeatModeler, RepeatScout, and LTR_FINDER; TE proteins: transposon elements annotated by RepeatMasker; combined TEs: merged results from approaches above, with overlap removed; unknown: repeat sequences RepeatMasker cannot classify.