Table 1. Summary of the Nile crocodile de novo transcriptome statistics.
| Sequence Parameters | Value | Sequence Parameters | Value |
|---|---|---|---|
| Total sequences | 406, 060 | GC content | 43.91988 |
| Total Transcripts | 40, 201 | Overall Score of the assembly | 0.3171227 |
| Smallest seq (bp) | 201 | GC_skew | 1.049384 |
| Largest seq (bp) | 23464 | AT_skew | -1.880586 |
| Total no of bases | 1.704537e+008 | CPG ratio | 1.351256 |
| Mean Seq length | 419.7747 | Fragments | 8090858 |
| Seq under 200 bp | 0 | Fragments mapped | 6189278 |
| Seq over 1000 bp | 21, 276 | % Fragments mapped | 76.49718 |
| Seq over 10,000 bp | 46 | Good mappings | 4,912,937 |
| No of Sequences with ORF | 82,119 | % Good mapping | 60.72208 |
| Mean ORF percentage | 51.39 | Bad mappings | 1,276,341 |
| Contigs containing 90% of bases (N90) | 221 | Potential Bridges | 11010 |
| Contigs containing 70% of bases (N70) | 298 | Bases uncovered | 6,809,699 |
| Contigs containing 50% of bases (N50) | 436 | % Bases uncovered | 3.995043 |
| Contigs containing 30% of bases (N30) | 772 | CRBB hits | 22546 |
| Reciprocal Blast Hit (RBH) per reference | 1.684297 | % Refs with CRBB | 67.04766 |
| Cut off score | 0.2557338 | Optimal Score | 0.3792041 |