Table 2.
Overlap list of the top 1% outliers from the genome scans
| Lyrata ID | Name | Description | Let scan Outlier | Lwt scan Outlier |
|---|---|---|---|---|
| AL1G10680 | PRD3 | Involved in meiotic double strand break formation | Yes | Yes |
| AL1G27690 | CYCA2;3 | Negatively regulates endocycles and acts as a key regulator of ploidy levels in endoreduplication | Yes | Yes |
| AL1G36300 | PBP3 | Putative poly(A) binding protein | Yes | Yes |
| AL2G25520 | SWEETIE | Involved in trehalose metabolic process | Yes | Yes |
| AL2G25920 | ASY1 | ASYNAPTIC 1 mediates meiotic crossovers | Yes | Yes |
| AL2G37810 | PDS5-like | ARM repeat superfamily protein | Yes | Yes |
| AL2G40680 | CMT1 | Chromomethylase 1 DNA methyltransferase | Yes | Yes |
| AL4G29630 | NAB | Nucleic acid-binding, OB-fold-like protein | Yes | Yes |
| AL4G29650 | Unknown | Yes | Yes | |
| AL4G30770 | MEE22 | Involved in endoreduplication and cell fate | Yes | Yes |
| AL4G46460 | ASY3 | ASYNAPTIC 3 required for normal meiosis | Yes | Yes |
| AL5G13440 | ASF | Asparagine synthase family protein | Yes | Yes |
| AL5G32850 | PSF | Pseudouridine synthase family protein | Yes | Yes |
| AL5G32860 | TFIIF | Functions in RNA polymerase II activity | Yes | Yes |
| AL5G32870 | GTE6 | Bromodomain containing nuclear-localised protein involved in leaf development | Yes | Yes |
| AL5G39280 | NRPA1 | Subunit of RNA polymerase I (aka Pol A) | Yes | Yes |
| AL6G15380 | SYN1 | A RAD21-like gene essential for meiosis | Yes | Yes |
| AL7G35790 | unknown | Yes | Yes | |
| AL8G25590 | DYAD, SWI1 | Involved in meiotic chromosome organisation | Yes | Yes |
| AL8G25600 | TPR-like | Tetratricopeptide repeat (TPR) protein | Yes | Yes |
| AL1G35730 | ZYP1a, b | Transverse filament of meiotic synaptonemal complex | No | Yes |
| AL4G20920 | SMC3 | Member of the meiotic cohesin complex | No | No |
| AL8G10260 | PDS5 | Member of the meiotic cohesin complex | No | Yes |
Overlap list of the top 1% outliers from the genome scan of diploid A. lyrata vs. Let and diploid A. lyrata vs. Lwt overlapped with the outliers of the A. arenosa diploid–tetraploid scan of Yant et al.13. The overlap between the diploid/Let and diploid/Lwt contrasts yielded 196 genes, which is approximately a third of the genes identified in each scan. The overlap of those two scans with the A. arenosa scan gave 20 genes in common. Core meiosis genes found in Yant et al.13, which were found in only one or none of the two lyrata scans, are stated in the bottom part of this list