Table 1.
Detailed RNA-seq statistics for each library, grouped by treatment. Individual libraries (n = 4–6 from individual fish) were prepared from RNA extracted from scales of fish sampled 1 day after treatment with the vehicle (C1d), estradiol (E1d) or genistein (Gen1d) and scales sampled five days after each treatment (C5d, E5d and Gen5d, respectively). The number of raw and filtered reads (in millions), percentage of mapped reads (for each individual library or on average) and the total numbers of reads produced in the study are presented.
Treatment | Lib name | Raw reads (millions) | Filtered reads (millions) | Mapped reads (%) |
---|---|---|---|---|
C1d | C1d_1 | 36.2 | 33.0 | 89.3% |
C1d_2 | 32.6 | 32.6 | 84.2% | |
C1d_3 | 35.7 | 35.7 | 85.6% | |
C1d_4 | 32.0 | 32.0 | 85.1% | |
C1d_5 | 32.1 | 32.1 | 86.4% | |
C1d_6 | 36.1 | 36.1 | 86.2% | |
E1d | E1d_1 | 31.5 | 31.5 | 87.2% |
E1d_2 | 37.6 | 37.6 | 84.6% | |
E1d_3 | 37.6 | 37.6 | 84.8% | |
E1d_4 | 39.2 | 39.2 | 84.1% | |
E1d_5 | 31.6 | 28.3 | 83.1% | |
Gen1d | Gen1d_1 | 41.6 | 41.6 | 84.0% |
Gen1d_2 | 38.5 | 35.1 | 85.4% | |
Gen1d_3 | 44.4 | 44.4 | 86.1% | |
Gen1d_4 | 30.4 | 30.4 | 83.7% | |
Gen1d_5 | 39.2 | 38.0 | 84.5% | |
C5d | C5d_1 | 40.9 | 40.9 | 84.6% |
C5d_2 | 30.7 | 30.7 | 87.3% | |
C5d_3 | 32.1 | 32.1 | 86.6% | |
C5d_4 | 29.3 | 29.3 | 88.3% | |
C5d_5 | 45.8 | 45.8 | 85.6% | |
E5d | E5d_1 | 35.4 | 35.4 | 85.6% |
E5d_2 | 36.1 | 36.1 | 85.9% | |
E5d_3 | 38.8 | 26.2 | 87.0% | |
E5d_4 | 51.0 | 49.0 | 88.9% | |
E5d_5 | 44.0 | 40.8 | 91.4% | |
Gen5d | Gen5d_1 | 44.0 | 44.0 | 84.5% |
Gen5d_2 | 40.9 | 40.9 | 86.1% | |
Gen5d_3 | 42.0 | 42.0 | 85.9% | |
Gen5d_4 | 44.3 | 44.3 | 85.7% | |
Average | 37.7 | 36.8 | ||
Total | 1131.7 | 1102.8 |