Table 4.
Detailed results from the annotation. Annotation results (in number of genes or percentage from total) are shown for the 749 genes differentially expressed with q < 0.05 (columns “DE all”) and for the selection of 332 genes differentially expressed at q < 0.05 with a minimum 2-fold change (columns “DE ≥ 2 FC”).
| DE all |
DE ≥ 2 FC |
|||
|---|---|---|---|---|
| Number | % | Number | % | |
| Annotation to different databases: | ||||
| Genes with BlastX hit to SwissProt | 593 | 79 | 229 | 68 |
| Genes assigned to predicted genes in genome | 600 | 80 | 275 | 83 |
| Genes with BlastX hit to GenBank | 676 | 90 | 283 | 85 |
| Final annotation using preference order: | ||||
| Genes annotated via SwissProt | 593 | 79 | 229 | 68 |
| Genes annotated via the sea bass genome | 92 | 12 | 61 | 19 |
| Genes annotated via GenBank | 34 | 5 | 24 | 7 |
| Annotated | 719 | 96 | 314 | 95 |
| Non-annotated | 30 | 4 | 18 | 5 |
| Total number of DE genes | 749 | 100 | 332 | 100 |
| Summary of annotation: | ||||
| Annotation to known proteins | 667 | 89 | 280 | 84 |
| Annotation to predicted proteins | 21 | 3 | 12 | 4 |
| Annotation to hypothetical/uncharacterized proteins | 20 | 3 | 14 | 4 |
| Mapping to non-annotated genes | 11 | 1 | 8 | 2 |