Table 4. Dysregulated expression of lncRNAs (FC >2; P<0.05) from a discovery set of lncRNA microarray profiling.
| Gene ref. ID | FC (abs) | Regulation | Chromosome | Start site | End site | |
|---|---|---|---|---|---|---|
| Poor LMCs vs. good LMCs | Poor LMCs vs. HCs | |||||
| ENST00000422956 | 5.77 | 8.16 | Down | chr2 | 113235536 | 113276581 |
| Lnc-AL355490.1-5:1 | 5.55 | 3.54 | Up | chr10 | 97387996 | 97388516 |
| NR_003672 | 3.19 | 2.74 | Up | chr9 | 136725231 | 136728184 |
| Lnc-ZC3H8-2:1 | 3.13 | 3.05 | Down | chr2 | 112400094 | 112401560 |
| Nr_026804 | 3.09 | 3.66 | Down | chr4 | 38612700 | 38664628 |
| Lnc-EPSTI1-5:2 | 2.90 | 3.05 | Down | chr13 | 42994894 | 43005217 |
| Nr_125375 | 2.71 | 4.20 | Down | chr5 | 473235 | 480891 |
| Lnc-PTCH1-7:1 | 2.66 | 4.29 | Down | chr9 | 95866110 | 95866343 |
| Nr_002312 | 2.65 | 2.26 | Up | chr14 | 20343070 | 20343411 |
| Lnc-CDC123-2:1 | 2.61 | 2.91 | Up | chr10 | 12264265 | 12264874 |
| Nr_003945 | 2.57 | 2.12 | Down | chr11 | 6713145 | 6721879 |
| Lnc-FCRL6-1:2 | 2.55 | 8.44 | Down | chr1 | 159800545 | 159808648 |
| Lnc-CD200R1-1:3 | 2.48 | 3.47 | Down | chr3 | 113012538 | 113019603 |
| Lnc-AMPH-9:1 | 2.44 | 5.66 | Down | chr7 | 38266335 | 38266805 |
| ENST00000588796 | 2.43 | 2.36 | Up | chr2 | 3960094 | 3974036 |
| Lnc-XAGE3-3:2 | 2.36 | 2.82 | Up | chrX | 52965449 | 52995472 |
| Lnc-CCDC82-6:2 | 2.31 | 2.80 | Down | chr11 | 96387139 | 96389919 |
| ENST00000518993 | 2.08 | 3.44 | Down | chr8 | 59119218 | 59121346 |
| Lnc-SERPINB9-4:1 | 2.08 | 2.45 | Down | chr6 | 2965453 | 2967178 |
| Lnc-SPIRE2-1:3 | 2.07 | 2.37 | Down | chr16 | 89816776 | 89821154 |
| Lnc-COX10-1:2 | 2.06 | 2.03 | Up | chr17 | 14209784 | 14211319 |
| Lnc-SETD4-12:3 | 2.06 | 2.46 | Down | chr21 | 34887045 | 35984710 |
| ENST00000620538 | 2.05 | 3.77 | Down | chr15 | 25708470 | 25710869 |
lncRNAs, long non-coding RNAs; FC, fold change; LMCs, leptomeningeal collaterals; HCs, healthy controls.