Table 5.
Illumina output sequencing data
| Sample | LC | HCC |
| Total raw reads | 29233450 | 29867922 |
| Total raw bases | 1461672500 | 1493396100 |
| Total clean reads | 17784320 | 21650404 |
| Total clean bases | 432618636 | 498024958 |
| Clean reads rate, % | 60.8 | 72.5 |
| Low quality reads | 10854 | 1494 |
| Low quality rate, % | 0.04 | 0.01 |
| Without 3p adaptor reads | 2626766 | 1093718 |
| Without 3p adaptor rate, % | 8.99 | 3.7 |
| Without insert reads | 984336 | 14858 |
| Without insert rate, % | 3.4 | 0.05 |
| Poly A/T reads | 1335340 | 6929464 |
| Poly A/T rate, % | 4.6 | 23.2 |
| Ex-length reads | 6491834 | 177984 |
| Ex-length rate, % | 22.2 | 0.6 |
| Raw reads Q20, % | 97.3 | 96.7 |
| Raw reads Q30, % | 94.5 | 95.5 |
| Clean reads Q20, % | 97.5 | 97.4 |
| Clean reads Q30, % | 94.6 | 96.4 |
HCC: Hepatocellular carcinoma; LC: Liver cirrhosis.