Table 1.
Strain/plasmid |
Country |
Isolation date |
GC |
Original sequence |
Revised |
Revised sequence |
||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Length (bp) |
GenBank no. |
Sequencing technology |
Reference |
Length (bp) |
GenBank no. |
Sequencing technology |
Reference |
|||||
ATCC 17978 |
nk |
1951 |
– |
|||||||||
Chromosome |
|
|
3 976 747 |
454 |
[41] |
Yes |
3 857 743 |
PacBio |
[20] |
|||
pAB1 |
|
|
13 408 |
454 |
No |
Not present |
na |
nk |
||||
pAB2 |
|
|
11 302 |
454 |
No |
Not present |
na |
nk |
||||
pAB3 |
|
|
Not present |
– |
454 |
Yes |
148 955 |
PacBio |
||||
AYE |
France |
2001 |
1 |
|||||||||
Chromosome |
|
|
3 936 291 |
Illumina |
[42] |
No |
– |
– |
– |
– |
||
p1ABAYE |
|
|
5644 |
Illumina |
No |
– |
– |
– |
– |
|||
p2ABAYE |
|
|
9661 |
Illumina |
No |
– |
– |
– |
– |
|||
p3ABAYE |
|
|
94 413 |
Illumina |
No |
– |
– |
– |
– |
|||
p4ABAYE |
|
|
2726 |
Illumina |
No |
– |
– |
– |
– |
|||
AB307-0294 |
USA |
1994 |
1 |
|||||||||
Chromosome |
|
|
3 760 981 |
454 |
[26] |
Yes |
3 759 495 |
MinION and Illumina |
This study |
|||
AB0057 |
USA |
2004 |
1 |
|||||||||
Chromosome |
|
|
4 050 513 |
454 |
[26] |
Yes |
4 055 148 |
Illumina |
[22] |
|||
pAB0057 |
|
|
8729 |
454 |
Yes |
8731 |
Illumina |
|||||
1656– 2 |
South Korea |
2011* |
2 |
|||||||||
Chromosome |
|
|
3 940 614 |
454 |
[43] |
No |
– |
– |
– |
– |
||
ABKp1 |
|
|
74 451 |
454 |
No |
– |
– |
– |
– |
|||
ABKp2 |
|
|
8041 |
454 |
No |
– |
– |
– |
– |
|||
ACICU |
Italy |
2005 |
2 |
|||||||||
Chromosome |
|
|
3 904 116 |
454 |
[27] |
Yes |
3 919 274 |
MinION and Illumina |
This study |
|||
pACICU1 |
|
|
28 279 |
454 |
Yes |
24 268 |
MinION and Illumina |
This study |
||||
pACICU2 |
|
|
64 366 |
454 |
Yes |
70 101 |
MinION and Illumina |
This study |
||||
TCDC-AB0715† |
Taiwan |
2007 |
2 |
|||||||||
Chromosome |
|
|
4 130 792 |
Illumina |
[44] |
Yes |
4 138 388 |
Illumina |
– |
|||
p1ABTCDC0715 |
|
|
8731 |
Illumina |
No |
– |
– |
– |
– |
|||
P2ABTCDC0715 |
|
|
70 894 |
Illumina |
No |
– |
– |
– |
– |
|||
MDR-ZJ06 |
China |
2006 |
2 |
|||||||||
Chromosome |
|
|
3 991 133 |
454 |
[45] |
Yes |
4 022 275 |
PacBio |
[24] |
|||
pMDR-ZJ06† |
|
|
20 301 |
454 |
Yes |
Not present† |
na |
na |
na |
|||
TYTH-1 |
Taiwan |
2008 |
2 |
[46] |
||||||||
Chromosome |
|
|
3 957 368 |
Illumina |
No |
– |
– |
– |
– |
|||
MDR-TJ |
China |
2012‡ |
2 |
|||||||||
Chromosome |
|
|
3 964 912 |
454 |
[47] |
No |
– |
– |
– |
– |
||
pABTJ1 |
|
|
77 528 |
454 |
No |
– |
– |
– |
– |
|||
pABTJ2 |
|
|
110 967 |
454 |
No |
– |
– |
– |
– |
*Genome submission date; isolation date is not known.
†pMDR-ZJ06 is not present in the revised genome
‡Recovered between 2007 and 2012.
na, not applicable; nk, not known.