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. 2019 Sep 26;5(10):e000298. doi: 10.1099/mgen.0.000298

Table 1.

Properties of early A. baumannii completed genomes

Strain/plasmid

Country

Isolation date

GC

Original sequence

Revised

Revised sequence

Length

(bp)

GenBank no.

Sequencing technology

Reference

Length (bp)

GenBank no.

Sequencing technology

Reference

ATCC 17978

nk

1951

Chromosome

3 976 747

CP000521.1

454

[41]

Yes

3 857 743

CP012004.1

PacBio

[20]

pAB1

13 408

CP000522.1

454

No

Not present

na

nk

pAB2

11 302

CP000523.1

454

No

Not present

na

nk

pAB3

Not present

454

Yes

148 955

CP012005.1

PacBio

AYE

France

2001

1

Chromosome

3 936 291

CU459141.1

Illumina

[42]

No

p1ABAYE

5644

CU459137.1

Illumina

No

p2ABAYE

9661

CU459138.1

Illumina

No

p3ABAYE

94 413

CU459140.1

Illumina

No

p4ABAYE

2726

CU459139.1

Illumina

No

AB307-0294

USA

1994

1

Chromosome

3 760 981

CP001172.1

454

[26]

Yes

3 759 495

CP001172.2

MinION and Illumina

This study

AB0057

USA

2004

1

Chromosome

4 050 513

CP001182.1

454

[26]

Yes

4 055 148

CP001182.2

Illumina

[22]

pAB0057

8729

CP001183.1

454

Yes

8731

CP001183.2

Illumina

1656– 2

South Korea

2011*

2

Chromosome

3 940 614

CP001921.1

454

[43]

No

ABKp1

74 451

CP001922.1

454

No

ABKp2

8041

CP001923.1

454

No

ACICU

Italy

2005

2

Chromosome

3 904 116

CP000863.1

454

[27]

Yes

3 919 274

CP031380.1

MinION and Illumina

This study

pACICU1

28 279

CP000864.1

454

Yes

24 268

CP031381.1

MinION and Illumina

This study

pACICU2

64 366

CP000865.1

454

Yes

70 101

CP031382.1

MinION and Illumina

This study

TCDC-AB0715†

Taiwan

2007

2

Chromosome

4 130 792

CP002522.1

Illumina

[44]

Yes

4 138 388

CP002522.2

Illumina

p1ABTCDC0715

8731

CP002523.1

Illumina

No

P2ABTCDC0715

70 894

CP002524.1

Illumina

No

MDR-ZJ06

China

2006

2

Chromosome

3 991 133

CP001937.1

454

[45]

Yes

4 022 275

CP001937.2

PacBio

[24]

pMDR-ZJ06†

20 301

CP001938.1

454

Yes

Not present†

na

na

na

TYTH-1

Taiwan

2008

2

[46]

Chromosome

3 957 368

CP003856

Illumina

No

MDR-TJ

China

2012‡

2

Chromosome

3 964 912

CP003500.1

454

[47]

No

pABTJ1

77 528

CP003501.1

454

No

pABTJ2

110 967

CP004359.1

454

No

*Genome submission date; isolation date is not known.

†pMDR-ZJ06 is not present in the revised genome

‡Recovered between 2007 and 2012.

na, not applicable; nk, not known.