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. 2019 Oct 16;5(10):e000307. doi: 10.1099/mgen.0.000307

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© 2019 The Authors

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 2. — Heatmap of the SPANDx BEDcov output from Stenotrophomonas spp. used to identify Stenotrophomonas maltophilia -specific loci. A region of 6 kb in total (including a 4 kb region encoding formate dehydrogenase α, β and γ subunits) was found to be highly conserved in S. maltophilia but absent or highly divergent in other Stenotrophomonas spp., including S. indicatrix and S. lactitubi (asterisk). The 20 kb region immediately downstream of this 4 kb locus (red horizontal bar) is included for comparison. Green, >99 % coverage across the BEDcov window according to BWA-MEM read mapping; red, <20 % coverage; orange through pale green, 20–99 % coverage.