| AAK1 | AP2 associated kinase 1 |
| ABL2 | v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) |
| Ad | adenovirus |
| AGC | automatic gain control |
| AKAP12 | A kinase (PRKA) anchor protein (gravin) 12 |
| AKT1S1 | AKT1 substrate 1 (proline-rich) |
| ARAF | Araf proto-oncogene, serine/threonine kinase |
| ARHGAP42 | Rho GTPase activating protein 42 |
| ARHGAP5 | Rho GTPase activating protein 5 |
| ARHGEF12 | Rho guanine nucleotide exchange factor (GEF) 12 |
| ARHGEF40 | Rho guanine nucleotide exchange factor (GEF) 40 |
| ATP2B1 | ATPase, Ca++ transporting, plasma membrane 1 |
| BMP2K | BMP2 inducible kinase |
| BP | biological process |
| CAFs | cancer-associated fibroblasts |
| CC | cellular component |
| CCNE1 | cyclin E1 |
| CDK17 | cyclin-dependent kinase 17 |
| CDKN1B | cyclin-dependent kinase inhibitor 1B |
| CHKA | choline kinase alpha |
| CORUM | the comprehensive resource of mammalian protein complexes |
| Cre | cyclization recombination enzyme |
| DAVID | the database for annotation, visualization and integrated discovery |
| DCLK1 | doublecortin-like kinase 1 |
| DOCK9 | dedicator of cytokinesis 9 |
| DTT | Dithiothreitol |
| DYRK2 | dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 |
| ECM | extracellular matrix |
| EGF | epidermal growth factor |
| EGFR | epidermal growth factor receptor |
| EIF4EBP1 | eukaryotic translation initiation factor 4E binding protein 1 |
| ERBB2 | erb-b2 receptor tyrosine kinase 2 |
| ERK | extracellular regulated kinase |
| FACS | fluorescence activated cell sorting |
| FARP1 | FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived) |
| FBS | fetal bovine serum |
| FDR | false discovery rate |
| FGD1 | FYVE, RhoGEF and PH domain containing 1 |
| FGF | fibroblast growth factor |
| GDP | guanosine diphosphate |
| GEO | gene expression omnibus |
| GFP | green fluorescent protein |
| GO | Gene Ontology |
| GPCR | G protein-coupled receptors |
| GSEA | gene Set Enrichment Analysis |
| GTP | guanosine triphosphate |
| GYS1 | glycogen synthase 1, muscle |
| HCD | higher-energy collisional dissociation |
| IAM | Iodoacetamide |
| ILK | integrin linked kinase |
| INPP5F | inositol polyphosphate-5-phosphatase F |
| ITS | insulin transferrin selenium |
| JUN | jun proto-oncogene |
| KEGG | kyoto encyclopedia of genes and genomes |
| KLHL32 | kelch-like 32 |
| KSR | kinase-substrate relationships |
| LC-MS/MS | large-scale liquid chromatography tandem mass spectrometry |
| LRRK2 | leucine-rich repeat kinase 2 |
| MAP1B | microtubule-associated protein 1B |
| MAP2K2 | mitogen-activated protein kinase kinase 2 |
| MAP2K4 | mitogen-activated protein kinase kinase 4 |
| MAP3K11 | mitogen-activated protein kinase kinase kinase 11 |
| MAPK | mitogen-activated protein kinase |
| MAPK3 | mitogen-activated protein kinase 3 |
| MF | molecular function |
| MINK1 | misshapen-like kinase 1 (zebrafish) |
| MMPs | matrix metalloproteinases |
| MPRIP | myosin phosphatase Rho interacting protein |
| MS | mass spectrometry |
| MSH6 | mutS homolog 6 |
| mTOR | mammalian target of rapamycin |
| MYOT | myotilin |
| PAK2 | p21 (RAC1) activated kinase 2 |
| PBS | phosphate buffered saline |
| PDGF | platelet-derived growth factor |
| PEAK1 | pseudopodium-enriched atypical kinase 1 |
| PHLPP2 | PH domain and leucine rich repeat protein phosphatase 2 |
| PIK3C2A | phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha |
| PIKFYVE | phosphoinositide kinase, FYVE type zinc finger containing |
| PIP complex | PINCH-1/2/ILK/α-parvin complex |
| PLCG1 | phospholipase C, gamma 1 |
| PPME1 | protein phosphatase methylesterase 1 |
| PPP1R14A | protein phosphatase 1, regulatory inhibitor subunit 14A |
| PPP1R18 | protein phosphatase 1, regulatory subunit 18 |
| PPP2R5E | protein phosphatase 2, regulatory subunit B’, epsilon |
| PRKD3 | protein kinase D3 |
| PTK2 | PTK2 protein tyrosine kinase 2 |
| PTPN12 | protein tyrosine phosphatase, non-receptor type 12 |
| RAB11FIP5 | RAB11 family interacting protein 5 (class I) |
| RAB3IL1 | RAB3A interacting protein (rabin3)-like 1 |
| RAB3IP | RAB3A interacting protein |
| REPS1 | RalBP1 associated Eps domain containing protein |
| RIOK3 | RIO kinase 3 |
| RIPK2 | receptor (TNFRSF)-interacting serine-threonine kinase 2 |
| RPS6 | ribosomal protein S6 |
| RPS6KA4 | ribosomal protein S6 kinase, polypeptide 4 |
| RTK | receptor tyrosine kinase |
| S | serine |
| T | Threonine |
| SCRIB | scribbled planar cell polarity |
| SHC1 | src homology 2 domain-containing transforming protein C1 |
| SMARCA5 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 |
| SMCR8 | Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) |
| SNTA1 | syntrophin, acidic 1 |
| SNTB2 | syntrophin, basic 2 |
| SOS1 | SOS Ras/Rac guanine nucleotide exchange factor 1 |
| SPRY | Sprouty |
| SpryKO | Spry1, 2 and 4 triple knock out |
| SRPK2 | serine/arginine-rich protein specific kinase 2 |
| STAT5A | signal transducer and activator of transcription 5A |
| STAT5B | signal transducer and activator of transcription 5B |
| STK3 | serine/threonine kinase 3 |
| STMN1 | stathmin 1 |
| TBC1D10A | TBC1 domain family, member 10a |
| TEAB | triethyl ammonium bicarbonate |
| TFA | trifluoroacetic acid |
| TGFBR2 | transforming growth factor, beta receptor II |
| TLN1 | talin 1 |
| TMT | tandem mass tag |
| TRIO | triple functional domain (PTPRF interacting) |
| TSC2 | TSC complex subunit 2 |
| UTRN | Utrophin |
| VCL | Vinculin |
| VEGF | vascular endothelial growth factor |
| WICH complex | WSTF-ISWI chromatin remodeling complex |
| Y | Tyrosine |
| YAP1 | yes-associated protein 1 |
| ZBTB11 | zinc finger and BTB domain containing 11 |
| ZMYND8 | zinc finger, MYND-type containing 8 |