Table 9 |.

Results of FluteMLE

Files	Description
Prefix_Flute.mle_summary.pdf	The integration of the results
Distribution_of_BetaScores	The distribution of the beta score: all genes and essential genes under different normalization methods
Linear_Fitting_of_BetaScores	The linear fitting of the beta score with different normalization methods
MAplot	MA plot of the beta score
Scatter_Treat_Ctrl	Scatter plot and rank plot of the treatment and control samples
Enrichment_Treat-Ctrl	Functional enrichment analysis of the genes, of which the beta scores are significantly different between treatment and control samples
Pathview_Treat_Ctrl	The KEGG map of the enriched terms
Scatter_9Square	A 9 square scatter plot of the treatment and control beta scores
Enrichment_9Square	Functional enrichment analysis of the four separate groups of genes from the 9 square scatter plot, which relate to the experimental conditions
Pathview_9Square	The KEGG map of the enriched terms