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. 2019 Nov 19;20:243. doi: 10.1186/s13059-019-1859-0

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Natural variation of DNA methylation among maize inbred lines. a The distribution of DMRs throughout maize chromosomes and the relationship with other genomic features is visualized. From the outer ring to the inner ring (1–6) are TEs, genes, regions with capture probes, CG DMRs, CHG DMRs, and CHH DMRs. Density of each type was calculated based on 1 Mb windows, and the centromeres are represented by black blocks. b Examples of context-specific DMRs. Each track represents different inbred lines. c Overlaps between CG, CHG, and CHH DMRs. d Total number of context-specific DMRs