Table 2.

Predicted recombination events in GLRaV-4 strains^a

Predicted Recombinant isolate	Recombination Event*	Predicted breakpoint positions in recombinant		Putative Parental Isolates**		Detection method***
		Begin	End	Minor Parent	Major Parent	RDP	GENE CONV	Bootscan	Maxchi	Chimaera	SiSscan	LARD	3Seq
St 4_LR106	event-1	4105	5240	St 5_WASB-5	St 4_WAMR-4	5.2 × 10−265	1.4 × 10− 236	3.8 × 10− 251	2.9 × 10−50	2.7 × 10−47	5.1 × 10−50	3.3 × 10− 316	2.4 × 10−13
				St 6_Estellat
				St 5_TRAJ1-BR
St 4_LR106	event-2	627	1551	St Pr	St 4_WAMR-4	2.0 × 10− 228	5.4 × 10− 173	6.3 × 10−218	1.2 × 10−41	4.4 × 10−07	2.4 × 10−43	3.3 × 10− 316	2.7 × 10− 13
St 6_Estellat	event-3	13,807	6312	St 5_3138–03	Unknown (St 9_Man086)	1.7 × 10− 109	1.1 × 10−88	9.9 × 10− 112	1.3 × 10−59	4.2 × 10−03	4.3 × 10−98	2.4 × 10− 243	1.2 × 10− 13
				St 5_TRAJ1-BR	Unknown (St 9_WALA-9)
				WASB-5

^aRecombinant and parental isolates and nucleotide position of breakpoints in recombinant isolates LR106 and Estellat are listed. The source of isolates of different GLRaV-4 strains are listed in Table 1. The recombination detection program software package (31) used for the detection of putative recombination events and the corresponding average P-values for each event are shown. ^*See Fig. 1 for details. ^** Minor and major parents are the isolates predicted to contribute smaller and larger sequence fragments, respectively. ^***Detection methods are cited in reference [31]