Table 4.

The genome areas identified to be rich in indels among the twelve acquired chloroplast genomes. Genome areas that have more than 5 indels per 500 bp are considered to be rich in indels

Genome position	Count	Region	Genomic context	Content
57,000–57,500	11	LSC	trnQ-UUG~accD	spacer
115,500–116,000	11	SSC	rpl32~trnL-UAG; trnL-UAG; trnL-UAG~ccsA	spacer; coding; spacer
66,000–66,500	10	LSC	psbE~petL	spacer
123,000–123,500	8	SSC	ndhA	coding
112,000–112,500	7	IRa;SSC	trnN-GUU~ndhF;ndhF	spacer; coding
53,000–53,500	6	LSC	trnR-UCU; trnR-UCU~trnS-GCU	coding; spacer
53,500–54,000	6	LSC	trnR-UCU~trnS-GCU	coding
56,000–56,500	6	LSC	psbK; psbK~trnQ-UUG	coding; spacer
10,000–10,500	5	LSC	trnV-UAC; trnV-UAC~ndhC	coding; spacer
13,000–13,500	5	LSC	ndhJ~trnF-GAA; trnF-GAA; trnF-GAA~trnL-UAA	spacer; coding; spacer
29,500–30,000	5	LSC	psbD~trnF-GGU	spacer
69,000–69,500	5	LSC	rps18; rps18~rps20	coding; spacer
115,000–115,500	5	SSC	rpl32; rpl32~trnL-UAG	coding; spacer
119,500–120,000	5	SSC	psaC~ndhE; ndhE~ndhG	spacer; spacer