REAGENT or RESOURCE	SOURCE	IDENTIFIER
Antibodies
FITC-Mouse anti Human CD24 Clone ML5	BD	Cat #560992; RRID: AB_10562033
TM4SF4-APC	BD	Cat #FAB7998A
MitoTracker Deep Red	Molecular Probes	Cat #M22426
CellTrace CFSE Cell Proliferation Kit, for flow cytometry	Invitrogen	Cat #C34554
Chemicals, Peptides, and Recombinant Proteins
Accutase	StemCell Technologies	Cat #07920
CMRL 1066 medium	Mediatech	Cat #99663-CV
DAPI Solution 1 mg/mL	Thermofisher	Cat #62248
Paraformaldehyde Aqueous Solution −16%	EMS	Cat #15710
May-Grunwald Stain	Sigma	Cat #MG1L-1L
10XPBS Buffer pH7.4	Ambion	Cat #AM9625
Giemsa Stain, Modified	Sigma	Cat #GS1l-1L
Deposited Data
scRNA-seq data	This paper	GEO: GSE112438
Experimental Models: Organisms/Strains
Zebrafish Danio-Rerio AB strain	ZIRC	N/A
Zebrafish Danio-Rerio CD41:eGFP strain	Bertrand et al., 2008	N/A
Software and Algorithms
GateID algorithm	This paper	https://github.com/chlbaron/GateID
Rstudio software Version 1.1.463	N/A	https://www.rstudio.com/products/rstudio/download/
Burrows-Wheeler Aligner (BWA)	Li and Durbin, 2009	http://bio-bwa.sourceforge.net/
Hclust function	Scialdone et al., 2016	https://www.rdocumentation.org/packages/stats/versions/3.6.1/topics/hclust
DynamicTreeCut R package	Langfelder and Horvath, 2008	https://cran.r-project.org/web/packages/dynamicTreeCut/index.html
mnnCorrect function	Haghverdi et al., 2018	https://rdrr.io/bioc/scran/man/mnnCorrect.html
Rmalschains R package	Bergmeir et al., 2016	https://cran.r-project.org/web/packages/Rmalschains/index.html
Controlled random search (CRS) and bound optimization with quadratic approximation (BOQA) functions (R package nloptr)	Price, 1983	https://cran.r-project.org/web/packages/nloptr/index.html
	Kaelo and Ali, 2006
Continous genetic algorithm (R package: GA)	Scrucca, 2013	https://cran.r-project.org/web/packages/GA/index.html
HJK (R package: dfoptim)	Kelley, 1999	https://cran.r-project.org/web/packages/dfoptim/index.html
SA (R package: GenSA)	Xiang et al., 2013	https://cran.r-project.org/web/packages/GenSA/index.html
DEoptim (R package: RcppDE)	Mullen et al., 2011	https://cran.r-project.org/web/packages/RcppDE/index.html
R package tmvtnorm	Wilhelm and Manjunath, 2010	https://cran.r-project.org/web/packages/tmvtnorm/index.html
Other
BD FACSJazz	BD	N/A
BD FACSInflux	BD	N/A
SORT-Seq reagents and equipment for scRNA-seq (CEL-Seq 2 based)	Muraro et al., 2016	N/A
Nanodrop II liquid handling platform	GCBiotech	N/A
40um cell strainer	VWR	Cat #10054-462
70um cell strainer	VWR	Cat #10054-456