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. 2018 Dec 11;50(1):1–12. doi: 10.1007/s42770-018-0020-7

Table 1.

Primers used for amplification and sequencing of 16S rDNA-, g19-, gp36-, and p28-specific genes for detection of Ehrlichia canis in blood samples from dogs

Target Primers Size (bp) Reagents Thermocycler Reference
16S rDNA

F-5′TATAGCCTCTGGCTATAGGAAATTGTTA′3

R-5′ACCATTTCTAATGGCTATTCCGTACTA′3

5′6-FAMTGGCAGACGGGTGAGTAATGGTAGG-TAMRA-3′ (probe)

93 bp

TaqMan Universal Master Mix (ThermoFisher Scientific, Inc., Waltham, MA, USA), 1 ×

Primer, 0.3 μM (each)

DNA, 3 μl

Fv, 12 μl

50 °C, 2 min

95 °C, 10 min

45 cycles, 95 °C, 15 s;

60 °C, 1 min;

Baneth et al. 2008
gp19

F 5′-ATTAGTGTTGTGGTTATGCAA-3′

R 5′-TACGCTTGCTGAATATCATGA-3′

414 bp

Buffer (Tris-HCl 200 mM, pH 8.4, KCl 500 mM),1 ×

MgCl2, 2.5 mM

dNTPs, 0.2 mM

Primers, 0.6 μM (each)

Taq, 0.125 U

DNA, 5 μl

Fv, 25 μl

94 °C, 3 min

35 cycles, 94 °C, 1 min;

55 °C, 1 min;

72 °C, 1.5 min;

72 °C, 5 min

Chen et al. 2010
p28

F 5′-ATGAATTGCAAAAAAATTCTTATA-3′

R 5′-TTAGAAGTTAAATCTTCCTCC -3′

843 bp

Buffer (Tris-HCl 200 mM, pH 8.4, KCl 500 mM), 1 ×

MgCl2, 2.5 mM

dNTPs, 0.2 mM

Primers, 0.6 μM (each)

Taq, 1.2 U

DNA, 5 μl

Fv, 25 μl

95 °C, 5 min

30 cycles, 95 °C, 30 s;

55 °C, 1 min;

72 °C, 2 min;

72 °C, 5 min.

Nakaghi et al. 2010
gp36

F 5′-GTATGTTTCTTTTATATCATGGC-3′

R 5′-GGTTATATTTCAGTTATCAGAAG-3′

840 bp

Buffer (Tris-HCl 200 mM, pH 8.4, KCl 500 mM), 1 ×

MgCl2, 2.5 mM

dNTPs, 0.2 mM

Primers, 0.6 μM (each)

Taq: 0.125 U

DNA, 5 μl

Fv, 25 μl

94 °C, 3 min

35 cycles, 94 °C, 1 min;

55 °C, 1 min;

72 °C, 1.5 min;

72 °C, 5 min

Chen et al. 2010

F, forward; R, reverse; bp, base pairs; min, minutes; sec, seconds; Fv, final volume; Taq polymerase and dNTPS-Invitrogen® (Thermo Fisher Scientific)