Table 1.
Target | Primers | Size (bp) | Reagents | Thermocycler | Reference |
---|---|---|---|---|---|
16S rDNA |
F-5′TATAGCCTCTGGCTATAGGAAATTGTTA′3 R-5′ACCATTTCTAATGGCTATTCCGTACTA′3 5′6-FAMTGGCAGACGGGTGAGTAATGGTAGG-TAMRA-3′ (probe) |
93 bp |
TaqMan Universal Master Mix (ThermoFisher Scientific, Inc., Waltham, MA, USA), 1 × Primer, 0.3 μM (each) DNA, 3 μl Fv, 12 μl |
50 °C, 2 min 95 °C, 10 min 45 cycles, 95 °C, 15 s; 60 °C, 1 min; |
Baneth et al. 2008 |
gp19 |
F 5′-ATTAGTGTTGTGGTTATGCAA-3′ R 5′-TACGCTTGCTGAATATCATGA-3′ |
414 bp |
Buffer (Tris-HCl 200 mM, pH 8.4, KCl 500 mM),1 × MgCl2, 2.5 mM dNTPs, 0.2 mM Primers, 0.6 μM (each) Taq, 0.125 U DNA, 5 μl Fv, 25 μl |
94 °C, 3 min 35 cycles, 94 °C, 1 min; 55 °C, 1 min; 72 °C, 1.5 min; 72 °C, 5 min |
Chen et al. 2010 |
p28 |
F 5′-ATGAATTGCAAAAAAATTCTTATA-3′ R 5′-TTAGAAGTTAAATCTTCCTCC -3′ |
843 bp |
Buffer (Tris-HCl 200 mM, pH 8.4, KCl 500 mM), 1 × MgCl2, 2.5 mM dNTPs, 0.2 mM Primers, 0.6 μM (each) Taq, 1.2 U DNA, 5 μl Fv, 25 μl |
95 °C, 5 min 30 cycles, 95 °C, 30 s; 55 °C, 1 min; 72 °C, 2 min; 72 °C, 5 min. |
Nakaghi et al. 2010 |
gp36 |
F 5′-GTATGTTTCTTTTATATCATGGC-3′ R 5′-GGTTATATTTCAGTTATCAGAAG-3′ |
840 bp |
Buffer (Tris-HCl 200 mM, pH 8.4, KCl 500 mM), 1 × MgCl2, 2.5 mM dNTPs, 0.2 mM Primers, 0.6 μM (each) Taq: 0.125 U DNA, 5 μl Fv, 25 μl |
94 °C, 3 min 35 cycles, 94 °C, 1 min; 55 °C, 1 min; 72 °C, 1.5 min; 72 °C, 5 min |
Chen et al. 2010 |
F, forward; R, reverse; bp, base pairs; min, minutes; sec, seconds; Fv, final volume; Taq polymerase and dNTPS-Invitrogen® (Thermo Fisher Scientific)