Table 3. Deconvolution of WBM samples.
Cell Type | LM22 | LM22p5 | MGSM27 | de novo MGSM27 |
---|---|---|---|---|
B.cells.naive | 0.12 | 0.15 | 0.01 | 0 |
B.cells.memory* | 0.84 | 0.55 | 0.09 | 0.01 |
Plasma.cells* | 9.84 | 4.59 | 3.89 | 0.85 |
T.cells.CD8 | 1.81 | 1.15 | 0.05 | 0 |
T.cells.CD4.naive | 0.59 | 0.14 | 0.12 | 3.99 |
T.cells.CD4.memory.resting | 0.24 | 0.15 | 0 | 0 |
T.cells.CD4.memory.activated | 0 | 0 | 0 | 0 |
T.cells.follicular.helper | 0.18 | 0.02 | 0.02 | 3.65 |
T.cells.regulatory..Tregs. | 0.16 | 0.06 | 0.06 | 3.33 |
T.cells.gamma.delta | 3.53 | 4.22 | 3.25 | 7.14 |
NK.cells.resting | 11 | 11.73 | 4.62 | 0.27 |
NK.cells.activated | 1.48 | 1.54 | 0.1 | 0 |
Monocytes | 14.37 | 12.94 | 8.12 | 4.09 |
Macrophages.M0 | 4.75 | 2.24 | 1.83 | 0.86 |
Macrophages.M1 | 2.09 | 1.07 | 1.11 | 1.15 |
Macrophages.M2 | 7.63 | 4.81 | 5 | 4.18 |
Dendritic.cells.resting | 0.73 | 0.23 | 0.17 | 0.02 |
Dendritic.cells.activated | 0.27 | 0.19 | 0.07 | 0.01 |
Mast.cells.resting | 12.11 | 12.4 | 4.9 | 0 |
Mast.cells.activated | 6.76 | 6.73 | 1.57 | 0 |
Eosinophils | 7.23 | 7.44 | 7.08 | 13.23 |
Neutrophils | 14.29 | 15.63 | 8.04 | 4.05 |
others | 0 | 0 | 0 | 0 |
PlasmaMemory* | 0 | 6.19 | 11.2 | 11.51 |
MM.plasma.cell* | 0 | 1.38 | 14.78 | 16.82 |
osteoclast | 0 | 2.27 | 14.37 | 13.95 |
osteoblast | 0 | 0.32 | 5.92 | 4.54 |
adipocyte | 0 | 1.86 | 3.62 | 6.34 |
Average (mean) deconvolution percentages of all cell types in the 440 WBM samples.
*Cell types are counted as CD138+ tumor