Table 4. Deconvolution of pancreas training set.
Cell Type | Top 100 | Top 100 hierarchical | Augmented | Augmented hierarchical | Reference |
---|---|---|---|---|---|
acinar.cell | 11.38 | 7.88 | 11.56 | 10.49 | 10.36 |
ductal.cell | 7.32 | 7.85 | 7.85 | 12.56 | 43.11 |
alpha.cell | 7.46 | 7.92 | 8.34 | 9.51 | 12.11 |
gamma.cell | 11.66 | 7.77 | 9.68 | 8.51 | 1.83 |
beta.cell | 7.11 | 11.75 | 7.66 | 10.77 | 3.51 |
co.expression.cell | 4.36 | 16.91 | 11.49 | 8.41 | 14.26 |
delta.cell | 0.00 | 12.27 | 2.56 | 8.04 | 0.88 |
unclassified.endocrine.cell | 7.02 | 20.63 | 6.11 | 12.29 | 0.40 |
endothelial.cell | 8.37 | 0.00 | 7.63 | 0.00 | 8.53 |
PSC.cell | 0.00 | 0.00 | 2.13 | 8.52 | 0.32 |
epsilon.cell | 0.00 | 7.02 | 2.68 | 6.11 | 0.16 |
mast.cell | 0.00 | 0.00 | 5.96 | 0.80 | 2.55 |
MHC.class.II.cell | 35.33 | 0.00 | 16.37 | 4.01 | 1.99 |
others | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
RMSE | 13.82 | 12.09 | 10.72 | 10.16 | 0.00 |
ρ | 0.05 | 0.12 | 0.26 | 0.39 | 1.00 |
Deconvolution cell type estimates of the normal pancreas training set.