Table 2.

User-friendly computational tools for inferring correlation networks.

Tool	Description	Platform	Reference/URL
Cyni toolbox (Cytoscape)	Performs several correlation analyses and includes other networks inference algorithms.	Multi	http://apps.cytoscape.org/apps/cynitoolbox; (Guitart-Pla et al., 2015)
Expression Correlation app (Cytoscape)	Performs Pearson correlation analysis and network inference.	Multi	http://apps.cytoscape.org/apps/expressioncorrelation
ARACNe/Mutual Information (geWorkbench)	Creates a network based on Mutual Information.	Multi	http://wiki.c2b2.columbia.edu/workbench/index.php/Home; (Floratos et al., 2010)
webCEMiTool	Performs comprehensive modular analyses in a fully automated manner, generating co-expression networks based on the WGCNA method.	Webserver	https://cemitool.sysbio.tools/; (Cardozo et al., 2019)