Table 5.
The classification results of HSC on lib4.
| Methods | No. clusters | SimT | Time (m) | Mem (GB) | N50 (bp) | NG50 (bp) | NA50 (bp) | NGA50 (bp) | GF (%) |
|---|---|---|---|---|---|---|---|---|---|
| SEED | 1732567 | 0.96 | 50.7 | 5.8 | 3854 | 3720 | 3543 | 3259 | 65.42 |
| CD-HIT | 956346 | 0.90 | 556.9 | 10.5 | 3645 | 3259 | 3186 | 3098 | 61.54 |
| Uclust | 987495 | 0.90 | 476.5 | 2.9 | 3247 | 2763 | 2294 | 2044 | 63.84 |
| HSC | 1587746 | 0.96 | 47.7 | 5.5 | 4361 | 3681 | 3641 | 3315 | 68.63 |
‘No. clusters' indicates the number of clusters, ‘Time (m)' indicates the time consumption in clustering, ‘Mem (GB)' indicates the memory consumption in clustering, ‘SimT' indicates the threshold of similarity, ‘GF (%)' indicates the genome fraction. Bold values represent best results.