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. 2019 Nov 20;10:5252. doi: 10.1038/s41467-019-13118-0

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — Distribution of ARGs in species of ruminal bacteria. The distribution of the resistance genes detected by at least two bioinformatic tools used in this study is presented in front of the tree as filled colored boxes. The 16S rRNA gene sequences used to construct the tree were obtained from the Hungate1000 collection and aligned using RDP Aligner. The tree was generated with the Maximum-Likelihood method using FastTree (1000 replicates) and visualized and annotated using iTOL. Only bootstrap values >0.7 are shown